SergeyBaikal

Limnological Institute Siberian Branch of the Russian Academy of Sciences

Pinned Repositories

pyhmmer
Cython bindings and Python interface to HMMER3.
Language:Cython136 9 7013
centrifuge
Classifier for metagenomic sequences
Language:C++256 13 27173
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Language:Python131 6 7216
cobra
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
Language:Python65 2 4211
SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data
Language:Python24 3 5512
Characteristics-of-RNA-viromes-of-Lake-Baikal
The repository contains supplementary materials on the implementation of the project 22-24-00612
0 1 00
Characteristics-of-the-RNA-seq-virus-fraction-in-Lake-Baikal-and-treated-wastewater
Characteristics of the RNA-seq virus fraction in Lake Baikal and treated wastewater (TW) from wastewater treatment plants (WTPs) located on the shores of the lake
0 1 00
Virophages-found-in-viromes-from-Lake-Baikal
294 MCP
1 1 00
taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
Language:Go403 7 10432
plass
sensitive and precise assembly of short sequencing reads
Language:C153 9 5015

SergeyBaikal/Virophages-found-in-viromes-from-Lake-Baikal
294 MCP
1 1 00
SergeyBaikal/Characteristics-of-RNA-viromes-of-Lake-Baikal
The repository contains supplementary materials on the implementation of the project 22-24-00612
0 1 00
SergeyBaikal/Characteristics-of-the-RNA-seq-virus-fraction-in-Lake-Baikal-and-treated-wastewater
Characteristics of the RNA-seq virus fraction in Lake Baikal and treated wastewater (TW) from wastewater treatment plants (WTPs) located on the shores of the lake
0 1 00