Pinned Repositories
partie
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
16S_amplicon_preprocessing_code
Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code
AJ
AJ analysis
Antb_Resist_CARDS
ATBResist_CARDS
Bioinformatics-BC
New to Bioinformatics? Start Here!
Bioinformatics567
metagenomics_tutorial
Analyzing shotgun data
micronetworks
viral_bioaerosol
xtract_forward allows you to extract your unmmerged high quality R1 reads
Viral_metagenomics
Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation
pjtorres's Repositories
pjtorres/metagenomics_tutorial
Analyzing shotgun data
pjtorres/16S_amplicon_preprocessing_code
Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code
pjtorres/Bioinformatics-BC
New to Bioinformatics? Start Here!
pjtorres/Viral_metagenomics
Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation
pjtorres/viral_bioaerosol
xtract_forward allows you to extract your unmmerged high quality R1 reads
pjtorres/AJ
AJ analysis
pjtorres/Antb_Resist_CARDS
ATBResist_CARDS
pjtorres/Bioinformatics567
pjtorres/biom262-2016
Code and notebooks for BIOM262
pjtorres/micronetworks
pjtorres/Random_code_4_data_processing
pjtorres/ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class
pjtorres/conterminator
Detection of incorrectly labeled sequences across kingdoms
pjtorres/Developmental-stage-Influences-metabolism-and-gut-microbiome-structure-in-PCOS-mouse-model
Code used to analyze and interpret 16S results from both a pubertal and adult PCOS mouse model
pjtorres/docker-bcl2fastq
pjtorres/metagenomics
code for processing metagenomics data
pjtorres/R_code
pjtorres/samsa2
SAMSA pipeline, version 2.0. This version supports use on a local cluster using DIAMOND for annotations.
pjtorres/statistics_notes
pjtorres/stream_lit
Stream lit apps
pjtorres/taxonomic_classifier
currently_trained_taxonomic classifier