DaehwanKimLab/centrifuge

Error in centrifuge-download

csaucar opened this issue · 2 comments

Hello all!

While trying to building the index with the script provided in the manual:
centrifuge-download -o taxonomy taxonomy
centrigue-download -o library -m -d "bacteria" refseq > seqid2taxid.map

I obtained the following errors:
ssh: could not resolve hostname hhtps: Temporary failure in name resolution
rsync: connection unexpectedly closed (0 bytes received so far) [Receiver]
resync error: error in rsync protocol data stream (code 12) at io.c(235) [Receive r:3.1.3]

Any ideas of what could I do?
Thanks in advance!
Carlos

Can you see any files downloaded to the library file? Do you have wget or curl on your system?

Hi,

There is a file called bacteria in the library file, in which there are two .txt (assembly_summary /_filtered).
I do have curl, as I have already used it for other purposes.
Thx