mourisl

Assistant Professor at the Department of Biomedical Data Science at Dartmouth. Interested in designing algorithms and developing bioinformatics methods.

Geisel School of Medicine at Dartmouth College

Pinned Repositories

TRUST4
TCR and BCR assembly from RNA-seq data
Language:C293 6 30152
centrifuger
Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
Language:C++53 3 154
chromap
Fast alignment and preprocessing of chromatin profiles
Language:C++3 1 00
heatmapannot
Add color heatmap to seaborn heatmaps
Language:Jupyter Notebook4 3 00
Lighter
Fast and memory-efficient sequencing error corrector
Language:C++92 10 3217
MSAplot
Plot multiple sequence alignment (MSA)
Language:Jupyter Notebook14 1 01
Rascaf
Scaffolding with RNA-seq read alignment
Language:C20 5 236
Rcorrector
Error correction for Illumina RNA-seq reads
Language:C++65 7 3718
T1K
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
Language:C62 8 369
PsiCLASS
Simultaneous multi-sample transcript assembler for RNA-seq data
Language:C17 3 385

mourisl's Repositories

mourisl/Lighter
Fast and memory-efficient sequencing error corrector
Language:C++92 10 3217
mourisl/Rcorrector
Error correction for Illumina RNA-seq reads
Language:C++65 7 3718
mourisl/T1K
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
Language:C62 8 369
mourisl/centrifuger
Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
Language:C++53 3 154
mourisl/Rascaf
Scaffolding with RNA-seq read alignment
Language:C20 5 236
mourisl/MSAplot
Plot multiple sequence alignment (MSA)
Language:Jupyter Notebook14 1 01
mourisl/heatmapannot
Add color heatmap to seaborn heatmaps
Language:Jupyter Notebook4 3 00
mourisl/chromap
Fast alignment and preprocessing of chromatin profiles
Language:C++3 1 00
mourisl/pvalannot
Add p-value annotation to the plot
Language:Jupyter Notebook3 2 00
mourisl/Tools
Random small scripts
Language:Perl2 3 0
mourisl/centrifuger_evaluations
Language:Jupyter Notebook1 3 0
mourisl/CLASS
Constraint-based Local Assembly and Selection of Splice variants
Language:C1 3 11
mourisl/mourisl.github.io
Language:HTML1 3 01
mourisl/T1K_manuscript_evaluation
The scripts used in the T1K manuscript
Language:Jupyter Notebook1 2 0
mourisl/poa
One partial order alignment implementation.
Language:C++0 2 10
mourisl/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Language:Python2 0
mourisl/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
mourisl/csvjoin
A python script that selects a key and columns from csv B and append that to csv file A . Require pandas.
Language:Python2 0
mourisl/DeepCAT
Deep Learning Method to Identify Cancer Associated TCRs - modified to output score for each CDR3
Language:Python2 01
mourisl/hisat2
Graph-based alignment (Hierarchical Graph FM index)
Language:C++
mourisl/hlaproject
Rigorous benchmarking of HLA callers for RNA seq data
Language:Jupyter Notebook1 0
mourisl/iSMART
Highly specific clustering of T cell receptor CDR3s
Language:Python2 0
mourisl/liulab-dfci.github.io
Know more about Shirley Liu lab at
Language:HTML1 0
mourisl/mixcr-rna-seq-paper
In silico data and tests
Language:Jupyter Notebook3 0
mourisl/mourisl
mourisl/MultiJobSlurm
About how to submit multitple jobs to slrum
Language:Shell2 01
mourisl/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
Language:R3 0
mourisl/ReadFormatter
The C++ class for extracting and concatenating segments from sequencing read
Language:C++2 0
mourisl/SAPPER
SAPPER -- call variance from ChIP-Seq directly
Language:Python3 0
mourisl/Spoon-Knife
This repo is for demonstration purposes only.
Language:HTML2 0