mourisl
Assistant Professor at the Department of Biomedical Data Science at Dartmouth. Interested in designing algorithms and developing bioinformatics methods.
Geisel School of Medicine at Dartmouth College
mourisl's Stars
pachterlab/ffq
A tool to find sequencing data and metadata from public databases.
yi-zhang/STHD
STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
RagnarGrootKoerkamp/minimizers
Reference implementations of minimizer schemes to go with the mod-minimizers paper.
YingZhou001/Immuannot-bt
V(D)J annotation for human genome assembly and long reads
3b1b/manim
Animation engine for explanatory math videos
psathyrella/partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
marco-oliva/afm
Accelerating FM-index queries with PFP
Olga-Bagrova/RepSeq_TCRanalysis
Project in Bioinformatics Institute with the TCR Analysis of Rep-Seq data
lh3/ropebwt3
Construction and utility of BWT for DNA string sets
airr-community/ogrdb
Website and associated database for managing submissions of inferred alleles
bioinformatics-centre/kaiju
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
zotero/zotero
Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.
liquidaty/zsv
zsv+lib: tabular data swiss-army knife CLI + world's fastest (simd) CSV parser
lh3/bedtk
A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
dcjones/coitrees
A very fast interval tree data structure
broadinstitute/poasta
Fast and exact gap-affine partial order alignment
rrwick/Metagenomics-Index-Correction
shenwei356/wfa
Wavefront alignment algorithm (WFA) in Golang
bede/seqsum
Robust individual and aggregate checksums for nucleotide sequences
StephenHwang/MEMO
MEMO: MEM-based pangenome indexing for k-mer queries
Teichlab/cell2tcr
Inference of TCR motifs
ivlachos/agamemnon
Accurate metagenomi/metatranscriptomic analysis pipeline
attractivechaos/khashl
Generic hash table library in C
gv20-therapeutics/IGSF8-NK
This repository contains the scripts to reproduce the figures for our paper titled 'IGSF8 is an Innate Immune Checkpoint and Cancer Immunotherapy Target'
human-pangenomics/hprc-tutorials
weijie-chen/Linear-Algebra-With-Python
Lecture Notes for Linear Algebra Featuring Python. This series of lecture notes will walk you through all the must-know concepts that set the foundation of data science or advanced quantitative skillsets. Suitable for statistician/econometrician, quantitative analysts, data scientists and etc. to quickly refresh the linear algebra with the assistance of Python computation and visualization.
ncborcherding/utility
Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
beyondpie/CEMBA_wmb_snATAC
Whole mouse brain snATAC seq analysis
HKU-BAL/Clair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing data
macs3-project/MACS
MACS -- Model-based Analysis of ChIP-Seq