mourisl/Lighter

Issues

• Getting `died with <Signals.SIGKILL: 9>` when trying to run Lighter with the human genome size (3.2MB)

  #36 opened a year ago by PeterSu92
  10

• line 15: 7429 Segmentation fault

  #35 opened a year ago by theo-allnutt-bioinformatics
  5

• Multiple input files

  #29 opened 3 years ago by AllisonStander
  8

• Segmentation fault when using -t > 2

  #30 opened 4 years ago by ealdraed
  3

• Appropriate for 2.5 Gbp Plant Genome?

  #28 opened 4 years ago by AllisonStander
  2

• EC on Raw or Trimmed?

  #32 opened 4 years ago by AllisonStander
  1

• Test - error report - 0 corrected reads?

  #34 opened 4 years ago by desmodus1984
  7

• When to use noQual and newQual ascii_quality_score

  #31 opened 6 years ago by AllisonStander
  2

• lighter installed from homebrew fails to complete

  #25 opened 8 years ago by rec3141
  3

• Issue with loading trusted k-mers

  #27 opened 7 years ago by standage
  5

• Trimmed and untrimmed read reported

  #26 opened 7 years ago by standage
  2

• Major behaviour change from 1.0.7 to 1.1.1

  #24 opened 8 years ago by tseemann
  4

• Lighter 1.1.1 has LIGHTER_VERSION = 1.1.0

  #22 opened 8 years ago by tseemann
  2

• Add advice to "brew install lighter"

  #23 opened 8 years ago by tseemann
  1

• Issue with Lighter performance

  #12 opened 10 years ago by flashton2003
  5

• Unintentional trimming of sequences

  #20 opened 9 years ago by schmeing
  3

• Invalid fastq files produced

  #19 opened 9 years ago by habibr
  2

• selecting k-mer size greater than 32

  #18 opened 9 years ago by AisaacO
  3

• Support CmdLine Basics

  #17 opened 9 years ago by proebuck
  3

• modify extension of output files

  #16 opened 10 years ago by cjprybol
  2

• Optional level-1 gzip output?

  #14 opened 10 years ago by lh3
  3

• Update quality scores when doing error correction

  #15 opened 10 years ago by chuckcoder
  2

• A couple of suggestions

  #13 opened 10 years ago by lh3
  1

• Produce a correction report

  #2 opened 10 years ago by tseemann
  1

• auto-detect quality encoding

  #6 opened 10 years ago by macmanes
  5

• Wrong number of reads detected

  #11 opened 10 years ago by vcepeda
  0

• invalid fastq file not being detected

  #10 opened 10 years ago by vcepeda
  0

• Error correction fails with small genome sizes

  #8 opened 10 years ago by bede
  6

• undefined reference to `gzgets'

  #7 opened 10 years ago by macmanes
  3

• accept .gz files

  #5 opened 10 years ago by macmanes
  2

• Bloom Filter A error rate

  #4 opened 10 years ago by macmanes
  1

• Segfault - after/during(?) storing trusted kmers

  #3 opened 11 years ago by ratman
  2