Pinned Repositories
claranet4
Python client for Aranet4 CO2 sensors
cryptocurrency-tools
hostile
Precise host read removal
kindel
Indel-aware consensus for aligned BAM
konstel
Hash-based phonemic sequence identifiers
seqsum
Robust individual and aggregate checksums for nucleotide sequences
tictax
Streaming sequence classification with web services ✓📌
vespasian
Genome-scale detection of selective pressure variation
primer-schemes
Tiling PCR primer scheme definitions
bede's Repositories
bede/hostile
Precise host read removal
bede/claranet4
Python client for Aranet4 CO2 sensors
bede/kindel
Indel-aware consensus for aligned BAM
bede/tictax
Streaming sequence classification with web services ✓📌
bede/seqsum
Robust individual and aggregate checksums for nucleotide sequences
bede/konstel
Hash-based phonemic sequence identifiers
bede/vespasian
Genome-scale detection of selective pressure variation
bede/workshop5
bede/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
bede/bede.github.io
bede/bioconda-recipes
Conda recipes for the bioconda channel.
bede/bte-binder
A jupyter Binder repository containing documentation and example analyses for Big Tree Explorer (BTE)
bede/defoptmwe
bede/ExpressLRS-Configurator
Cross platform configuration & build tool for the ExpressLRS radio link
bede/fieldbioinformatics
The ARTIC field bioinformatics pipeline
bede/oci-cli
Command Line Interface for Oracle Cloud Infrastructure
bede/primaschema
Generate primer scheme bundles from a YAML and BED file
bede/pyaranet4
A cross-platform Python interface for the Aranet4 CO₂ meter
bede/SARS-CoV-2-Contextual-Data-Specification
Collection template and associated materials for SARS-CoV-2 metadata
bede/type_variants
bede/venorm
bede/betaflight
Tests for future betaflight development
bede/dnaio
Read and write FASTQ and FASTA efficiently from Python
bede/levelslevels
Flood dashboard for Muchelney (TA10)
bede/pipeline-resources
Bioinformatics Pipeline and Visualization resources
bede/primerschemes
Repo for PrimerSchemes
bede/PTRHash
PTRHash minimal perfect hash function, based of PTHash
bede/rsvAB-sequencing
NEBNext RSV A/B Multiplex PCR sequencing primers
bede/SARS-CoV-2
SARs-CoV-2 Primer schemes
bede/wf-template
Nextflow workflow template repository