Pinned Repositories
claranet4
Python client for Aranet4 CO2 sensors
cryptocurrency-tools
hostile
Precise host read removal
kindel
Indel-aware consensus for aligned BAM
konstel
Hash-based phonemic sequence identifiers
seqsum
Robust individual and aggregate checksums for nucleotide sequences
tictax
Streaming sequence classification with web services ✓📌
vespasian
Genome-scale detection of selective pressure variation
primer-schemes
Tiling PCR primer scheme definitions
bede's Repositories
bede/cryptocurrency-tools
bede/ABM-in-R
An introductio to Agent-Based Modelling in R
bede/bionode-ncbi
Node.js module for working with the NCBI API (aka e-utils).
bede/circle_plot
Draws circle plot using Python for three-spined stickleback RNA-sequencing data.
bede/HIVEVO_access
bede/hivwholeseq
Data processing pipeline for HIV next-gen sequencing
bede/homebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
bede/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
bede/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
bede/lambda
the Local Aligner for Massive Biological DatA
bede/Lighter
bede/MOSAIK
reference-guided aligner for next-generation sequencing technologies
bede/nextflu
Real-time tracking of influenza evolution
bede/nextstrain_base
pipeline components for realtime virus analysis
bede/PAML
This is code for running Orthofinder -> PAML
bede/python-kmer-graph-generator
Annotated source of a kmer graph generator in Python
bede/sod
Simulator of Diversity
bede/soil-meta-analysis-2015
MG
bede/synmut
Manuscript: Quantifying Selection against Synonymous Mutations in HIV-1 env Evolution.
bede/treetool
tool to build and visualize annotated influenza phylogenies based on blab/nextflu