cjprybol

Directed evolution and biological design

LocusBio

Pinned Repositories

BioSequences.jl
Biological sequences for the julia language
Language:Julia153 15 9948
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
Language:Julia62 9 4720
Kmers.jl
Efficient types and methods for K-mer biosequences
Language:Julia26 10 197
ExpectationMaximizationExample
Walkthrough of the example shown in Do, C. B., & Batzoglou, S. (2008). What is the expectation maximization algorithm? Nature Biotechnology, 26(8), 897–899. http://doi.org/10.1038/nbt1406
Language:Jupyter Notebook1 3 00
foobar_solutions
Jupyter notebooks of some google foobar challenge questions
4 3 10
Mycelia
In Development: Multiomic analysis and data integration for biological characterization, prediction, and design. Designed for linux-based HPC and cloud systems.
Language:Julia4 4 473
reproducibility-via-singularity
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
Language:R26 4 11
uCSV.jl
A Julia package for reading and writing delimited-text; µ in size, ∞ in flexibility
Language:Julia8 4 122
DataFrames.jl
In-memory tabular data in Julia
Language:Julia1.7k 44 1.8k371
julia
The Julia Programming Language
Language:Julia46.4k 930 24.7k5.5k

cjprybol's Repositories

cjprybol/reproducibility-via-singularity
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
Language:R26 4 11
cjprybol/uCSV.jl
A Julia package for reading and writing delimited-text; µ in size, ∞ in flexibility
Language:Julia8 4 122
cjprybol/foobar_solutions
Jupyter notebooks of some google foobar challenge questions
4 3 10
cjprybol/Mycelia
In Development: Multiomic analysis and data integration for biological characterization, prediction, and design. Designed for linux-based HPC and cloud systems.
Language:Julia4 4 473
cjprybol/ExpectationMaximizationExample
Walkthrough of the example shown in Do, C. B., & Batzoglou, S. (2008). What is the expectation maximization algorithm? Nature Biotechnology, 26(8), 897–899. http://doi.org/10.1038/nbt1406
Language:Jupyter Notebook1 3 00
cjprybol/BioSequences.jl
Biological sequences for the julia language
Language:Julia2 0
cjprybol/Eisenia
Language:Julia2 1
cjprybol/GFF3.jl
Language:Julia1 0
cjprybol/Kmers.jl
In development: Kmer types and methods for julia
Language:Julia1 0
cjprybol/LightGraphs.jl
An optimized graphs package for the Julia programming language
Language:Julia3 0
cjprybol/Neurospora_BSA_mutation_mapper
Language:Shell3 6
cjprybol/pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Language:Cython1 0
cjprybol/RBP
Language:Jupyter Notebook3 0
cjprybol/sars-cov2-pangenome-analysis
Language:Python2 1
cjprybol/singularity-testing
Language:Jupyter Notebook4 13
cjprybol/static-demo
Language:Jupyter Notebook2 0

cjprybol

Pinned Repositories

BioSequences.jl

FASTX.jl

Kmers.jl

ExpectationMaximizationExample

foobar_solutions

Mycelia

reproducibility-via-singularity

uCSV.jl

DataFrames.jl

julia

cjprybol's Repositories

cjprybol/reproducibility-via-singularity

cjprybol/uCSV.jl

cjprybol/foobar_solutions

cjprybol/Mycelia

cjprybol/ExpectationMaximizationExample

cjprybol/BioSequences.jl

cjprybol/Eisenia

cjprybol/GFF3.jl

cjprybol/Kmers.jl

cjprybol/LightGraphs.jl

cjprybol/Neurospora_BSA_mutation_mapper

cjprybol/pyrodigal

cjprybol/RBP

cjprybol/sars-cov2-pangenome-analysis

cjprybol/singularity-testing

cjprybol/static-demo