Pinned Repositories
BioSequences.jl
Biological sequences for the julia language
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
Kmers.jl
In development: Kmer types and methods for julia
ExpectationMaximizationExample
Walkthrough of the example shown in Do, C. B., & Batzoglou, S. (2008). What is the expectation maximization algorithm? Nature Biotechnology, 26(8), 897–899. http://doi.org/10.1038/nbt1406
foobar_solutions
Jupyter notebooks of some google foobar challenge questions
Mycelia
reproducibility-via-singularity
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
uCSV.jl
A Julia package for reading and writing delimited-text; µ in size, ∞ in flexibility
DataFrames.jl
In-memory tabular data in Julia
julia
The Julia Programming Language
cjprybol's Repositories
cjprybol/reproducibility-via-singularity
A demo and tutorial for how to use git and singularity to make your research more portable and reproducible
cjprybol/uCSV.jl
A Julia package for reading and writing delimited-text; µ in size, ∞ in flexibility
cjprybol/foobar_solutions
Jupyter notebooks of some google foobar challenge questions
cjprybol/ExpectationMaximizationExample
Walkthrough of the example shown in Do, C. B., & Batzoglou, S. (2008). What is the expectation maximization algorithm? Nature Biotechnology, 26(8), 897–899. http://doi.org/10.1038/nbt1406
cjprybol/Mycelia
cjprybol/BioSequences.jl
Biological sequences for the julia language
cjprybol/CV
cjprybol/Eisenia
cjprybol/GFF3.jl
cjprybol/Kmers.jl
In development: Kmer types and methods for julia
cjprybol/LightGraphs.jl
An optimized graphs package for the Julia programming language
cjprybol/Neurospora_BSA_mutation_mapper
cjprybol/pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
cjprybol/RBP
cjprybol/sars-cov2-pangenome-analysis
cjprybol/singularity-testing
cjprybol/static-demo
cjprybol/viral-pangenome-discovery