desmodus1984

Pinned Repositories

STAR
RNA-seq aligner
Language:C1.9k 84 2.1k508
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Language:Java990 157 807371
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Language:C++780 38 839164
cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C532 22 889111
conda
A system-level, binary package and environment manager running on all major operating systems and platforms.
Language:Python6.5k 197 9.8k1.7k
Circular_MTDNA_assembly
Circular mitogenome assembly code
Language:Shell0 1 00
freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Language:C++795 46 692265
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language:Python3.3k 156 853731
dorado
Oxford Nanopore's Basecaller
Language:C++559 31 1.2k68
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Language:C687 48 2k240

desmodus1984/Circular_MTDNA_assembly
Circular mitogenome assembly code
Language:Shell0 1 00