alexdobin/STAR

Issues

• GeneFull_ExonOverIntron - Error of segmentation (core dumped) "${cmd}" "$@"

  #2250 opened a month ago by wjbsb
  0

• Huge difference in mapping rates between two mouse tissues?

  #2249 opened a month ago by jdrnevich
  0

• Strange behaviour of the percentages of unmapped reads when mapping to highly repetitive regions

  #2248 opened a month ago by nikitin-p
  0

• Gff3, no gene name in ouput - MissingGeneID

  #2209 opened 4 months ago by desmodus1984
  1

• GeneFull Mapping Discrepancy

  #2247 opened 2 months ago by mattg478
  0

• why STAR --clip[3p,5p]Nbases show up in the bam?

  #2246 opened 2 months ago by mkarikom
  2

• STARsolo and Cellranger (v8) differences in estimating number of cells

  #2245 opened 2 months ago by angelasanzo
  0

• Add RG ID to cell barcodes

  #2244 opened 2 months ago by drneavin
  0

• Velocyto question

  #2239 opened 2 months ago by Liripo
  1

• How to include the lane index in STARsolo count matrix barcodes.tsv?

  #2243 opened 2 months ago by mkarikom
  0

• FATAL ERROR in input read file: the total length of barcode sequence is 151 not equal to expected 28, and also not mapped reads

  #2202 opened 5 months ago by lopezCascales
  2

• How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?

  #2241 opened 2 months ago by mkarikom
  0

• bam sort silently fails

  #2240 opened 2 months ago by mkarikom
  1

• STARsolo settings for SMART-seq3

  #2238 opened 2 months ago by apredeus
  0

• Custom refgen generation (scRNA)

  #2234 opened 2 months ago by radiasso
  0

• What's the difference between "outSAMstrandField" and "outFilterIntronMotifs RemoveNoncanonical"

  #2237 opened 2 months ago by hungweichen0327
  0

• Multi Mapping Loci Meaning

  #2236 opened 2 months ago by mattg478
  0

• Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?

  #2235 opened 2 months ago by Vijithkumar2020
  0

• Indexing transcriptome bam file

  #2233 opened 2 months ago by aayushraman
  0

• transcriptInfo.tab format

  #2232 opened 2 months ago by starkiller-liuzhiming
  0

• Uniquely mapped reads number

  #2231 opened 2 months ago by hamzaaitabbou96
  0

• Question about Read Length parameter during reference creation

  #2230 opened 3 months ago by Motoufiq
  0

• Overrepresentation of Reads Mapping to Intronic Regions

  #2229 opened 3 months ago by Matthieu-Duot
  0

• soloUMIdedup 1MM_Directional_UMItools and 1MM_Directional difference.

  #2228 opened 3 months ago by araboapresyan
  0

• Mapping speed of STAR is very different for similar bam

  #2227 opened 3 months ago by dingyaozhang
  0

• STARsolo parameters to match new 10x GEM chemistry

  #2215 opened 4 months ago by ekiernan
  0

• STARsolo run with --soloType CB_UMI_Complex uses too much memory.

  #2222 opened 3 months ago by brgew
  1

• Corrupt SAM/BAM file due to NULL injected into MD tag with two-pass

  #2226 opened 3 months ago by btownshend
  0

• soloType CB_UMI_Complex is incompatible with soloCBwhitelist None

  #2225 opened 3 months ago by aepstein96
  0

• Reference genome file download problem

  #2224 opened 3 months ago by FeeFaysalTusar
  0

• Add index sequence to Unmapped read FASTQ headers

  #2223 opened 3 months ago by andrewkennard
  0

• Much fewer than expected exons.

  #2221 opened 3 months ago by EvanKomp
  0

• --soloType CB_UMI_Complex ,didn't match barcodes or UMIs

  #2219 opened 4 months ago by StardDii
  1

• ```--outSAMunmapped Within``` some reads being lost

  #2218 opened 4 months ago by alexander-e-f-smith
  0

• Error in compiling in linux

  #2217 opened 4 months ago by faraza621
  0

• Analyzing SMART-Seq data (paired end) as CB_UMI_Simple

  #2216 opened 4 months ago by pchaturvedi-takara
  0

• STAR solo adapter sequences all A's after 31 bp

  #2214 opened 4 months ago by mohammedmsk
  0

• STAR manual cannot be normally opened

  #2213 opened 4 months ago by Abieskawa
  1

• A question about align reverse forward stranded RNAseq data

  #2211 opened 4 months ago by QianhuiWan
  0

• Question about sequencing saturation

  #2210 opened 4 months ago by zk-P
  0

• Only one sample is Mapped

  #2207 opened 4 months ago by Gabriela-PH
  3

• Error during mapping to mitochondrial genome

  #2208 opened 4 months ago by desmodus1984
  0

• STARsolo UMI calling problem (UMI position shift) after cell barcode correction by barcode whitelist

  #2205 opened 4 months ago by s-shichino1989
  0

• STARsolo for chimeric reads

  #2203 opened 5 months ago by Sogand65
  0

• [2.7.10b] Read length in FATAL ERROR message does not match actual read length

  #2200 opened 5 months ago by sbresnahan
  2

• STARSolo, alignment of Scell from different lanes

  #2201 opened 5 months ago by oneito
  0

• Fatal INPUT FILE error, no exon lines in the GTF file

  #2199 opened 5 months ago by Alecrim24
  0

• Alignement of viral genome with reads from infected host

  #2198 opened 5 months ago by LioLenr
  0

• Some reads do not seem to be assigned to genes correctly by starsolo

  #2197 opened 5 months ago by zhouyiqi91
  0

• STAR hangs at 300% CPU

  #2196 opened 5 months ago by Redmar-van-den-Berg
  0