Pinned Repositories
learn2thermDB
Prediction of high temperature stable protein structures approached as a natural language problem
learn2thermML
Machine learning of low and high temperature proteins
nomelt
Designing high temperature protein sequences via learned language processing
aide
An attempt to create a modular, unifying code base for incorporating recent (and future) AI techniques to accelerate directed evolution campaigns.
aide_predict
A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn
alphafold
Open source code for AlphaFold.
C-HACK
Chem E Hackathon 2021 Tutorial Notebooks
CHACK_documents
Supporting documents for the C-HACK 2022 event given to students
quickq
Prediction of partition functions using trained ML estimators
thermalizer
EvanKomp's Repositories
EvanKomp/aide_predict
A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn
EvanKomp/aide
An attempt to create a modular, unifying code base for incorporating recent (and future) AI techniques to accelerate directed evolution campaigns.
EvanKomp/thermalizer
EvanKomp/alphafold
Open source code for AlphaFold.
EvanKomp/CHACK_documents
Supporting documents for the C-HACK 2022 event given to students
EvanKomp/cse512_hw
EvanKomp/DAMPN
Isolated repo for testing distance aware message passing architecture
EvanKomp/quickq
Prediction of partition functions using trained ML estimators
EvanKomp/combining-evolutionary-and-assay-labelled-data
EvanKomp/cse541_hw
EvanKomp/dsmcer_guest_lecture
Hyperparameter optimization lecture
EvanKomp/dvc_demo
EvanKomp/EpHod
Deep learning prediction of enzyme optimum pH
EvanKomp/esm3
Toying with ESM
EvanKomp/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
EvanKomp/EVE
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
EvanKomp/EvoProtGrad
Directed evolution of proteins in sequence space with gradients
EvanKomp/FriendGems
Software to host a private database and UI for friends to share and rate their hidden gems
EvanKomp/GANdy
This repository estimates uncertainty using GANs and other machine learning models such as GPs and BNNs.
EvanKomp/haddock3
Official repo of the modular BioExcel version of HADDOCK
EvanKomp/kestrel_tools
Flask app to be run on linux server that can communicate with Kestrel, submit jobs, and retrieve them for users.
EvanKomp/molscore
Provide metrics on the depth and breadth of a set of molecules
EvanKomp/NOAA_storm_data
Pull and extract NOAA storm data fro the purposes of the C-HACK tutorial
EvanKomp/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
EvanKomp/TemBERTure
EvanKomp/test
EvanKomp/tutorials
EvanKomp/UWrc.github.io
The best research computing website in all the land.
EvanKomp/ValidProt
Validating protein pair functionality
EvanKomp/zotero_organize
Read zotero abstracts using LLM in order to create a new organization of folders.