nikitin-p
My research interests include Genomics and Bioinformatics, specifically next-generation sequencing data analysis.
Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State UniversityMoscow
Pinned Repositories
Allium_analysis
Here you can find all necessary data, R and Python analysis scripts in Allium studies.
chloroplast-genome-assembly
Nextflow pipeline for chloroplast genome assembly
darevskia-pericentromere-analysis
Analysis of pericentromeric sequences of Darevskia lizards
darevskia_thesis_2022
Here you can find supplementary material for Darevskia studies of my thesis.
Lichenibacterium_analysis
Here you can find all necessary Python scripts for genes location visualization in Lichenibacterium sp. studies.
nextflow-cager
Nextflow pipeline for CAGE data processing. As a result it creates R CAGEr object for further analysis.
repeat-signal-analysis
Nextflow pipeline for analysis of short-read data with T2T human reference genome
repeat-signal-extraction
Nextflow pipeline for extracting stable and converging multi-mapped reads from a given BAM file
t2t-mappability
Analysis of sequencing data mappability to T2T reference genome
UniqueMapTrack
Nextflow pipeline for creating mappability track for a set of fasta sequences
nikitin-p's Repositories
nikitin-p/repeat-signal-analysis
Nextflow pipeline for analysis of short-read data with T2T human reference genome
nikitin-p/Allium_analysis
Here you can find all necessary data, R and Python analysis scripts in Allium studies.
nikitin-p/chloroplast-genome-assembly
Nextflow pipeline for chloroplast genome assembly
nikitin-p/darevskia-pericentromere-analysis
Analysis of pericentromeric sequences of Darevskia lizards
nikitin-p/darevskia_thesis_2022
Here you can find supplementary material for Darevskia studies of my thesis.
nikitin-p/Lichenibacterium_analysis
Here you can find all necessary Python scripts for genes location visualization in Lichenibacterium sp. studies.
nikitin-p/nextflow-cager
Nextflow pipeline for CAGE data processing. As a result it creates R CAGEr object for further analysis.
nikitin-p/repeat-signal-extraction
Nextflow pipeline for extracting stable and converging multi-mapped reads from a given BAM file
nikitin-p/t2t-mappability
Analysis of sequencing data mappability to T2T reference genome
nikitin-p/UniqueMapTrack
Nextflow pipeline for creating mappability track for a set of fasta sequences