sbresnahan
Postdoc data scientist at the UT Houston MD Anderson Cancer Center | PhD in Molecular, Cellular and Integrative Biosciences from Penn State
@GrozingerLabTulsa, OK
Pinned Repositories
allele-specific-transcription-and-m6A
Examining the role of transcription and post-transcriptional modifications on mediating intragenomic conflict in honey bees
AST-tutorial
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
Dissertation-Appendix-D
Supplementary information for Chapter 5 of "Molecular Mechanisms of Phenotypic Variation in Honey Bees" - a dissertation in Molecular, Cellular, and Integrative Biosciences by Sean T. Bresnahan
Galbraith-2016-PNAS-ASE-replication
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
IGC-CD-SM
Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"
IGC-retinue
Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.
localBlastTutorial
A quick tutorial for local BLAST using a custom sequence database
metacleaner
Software for automated curation of barcode sequence databases for metabarcoding and metagenomics
PE-RNAseq-Workflow
Pipeline for QC, trimming, alignment, and transcript-level quantification of paired-end RNAseq data + concatenation of alignment metrics produced by Picard tools.
sbresnahan.github.io
My website
sbresnahan's Repositories
sbresnahan/Galbraith-2016-PNAS-ASE-replication
Replicating the bioinformatics and statistics pipelines for allele-specific expression analysis of ovary tissue from sterile and reproductive reciprocally crossed honey bees as described in Galbraith et al. (2016). PNAS. https://www.pnas.org/content/113/4/1020
sbresnahan/allele-specific-transcription-and-m6A
Examining the role of transcription and post-transcriptional modifications on mediating intragenomic conflict in honey bees
sbresnahan/AST-tutorial
This tutorial demonstrates best practices for processing whole genome sequence (WGS) and mRNA sequencing (mRNA-seq) reads for allele-specific transcriptomics analysis.
sbresnahan/Dissertation-Appendix-D
Supplementary information for Chapter 5 of "Molecular Mechanisms of Phenotypic Variation in Honey Bees" - a dissertation in Molecular, Cellular, and Integrative Biosciences by Sean T. Bresnahan
sbresnahan/IGC-CD-SM
Supplementary Materials for "Intragenomic conflict underlies extreme phenotypic plasticity in queen-worker caste determination in honey bees (Apis mellifera)"
sbresnahan/IGC-retinue
Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.
sbresnahan/localBlastTutorial
A quick tutorial for local BLAST using a custom sequence database
sbresnahan/metacleaner
Software for automated curation of barcode sequence databases for metabarcoding and metagenomics
sbresnahan/PE-RNAseq-Workflow
Pipeline for QC, trimming, alignment, and transcript-level quantification of paired-end RNAseq data + concatenation of alignment metrics produced by Picard tools.
sbresnahan/sbresnahan.github.io
My website
sbresnahan/TexasCancerGenomics
Analysis of paired tumor-normal whole exome sequencing data generated in a pilot open-access study of participants in Texas.
sbresnahan/Winter-Honeybee-Transcriptome
Analysis of summer nurse & forager and winter honey bee fat body and flight muscle transcriptomes
sbresnahan/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes