freebayes/freebayes

Issues

• question on using --bam-list

  #810 opened 5 months ago by goeckeritz
  1

• Issue with --min-coverage Option in FreeBayes

  #817 opened a month ago by chantisakee
  0

• Failed to clone 'contrib/multichoose' a second time, aborting

  #806 opened 7 months ago by konopinski
  4

• Freebayes 1.3.8 does not build

  #803 opened 7 months ago by feghalya
  2

• SNP but not seen in IGV

  #815 opened 3 months ago by cpwater
  2

• Compressed bgzip reference file

  #808 opened a month ago by aghozlane
  2

• In/Del variants missed by Freebayes 1.3.8

  #807 opened a month ago by h836472
  6

• freebayes-parallel indexing problems

  #816 opened 2 months ago by orenshaniathuji
  0

• freebayes-parallel error

  #813 opened 3 months ago by bfraser-commits
  1

• frequency of each variant per sample

  #792 opened 2 months ago by emilydolivo97
  6

• Missing 'aln.bam' file in Naive variant calling readme example

  #814 opened 3 months ago by veghp
  0

• Very high QUAL values

  #782 opened a year ago by mbhall88
  7

• FreeBayes in Nanopore data

  #801 opened 3 months ago by pabloangulo7
  2

• Strand Bias probability

  #812 opened 3 months ago by shamavirani
  0

• Inexplicably low DP values

  #781 opened a year ago by jpalmer37
  3

• Aborted (core dumped)

  #771 opened 2 years ago by suhuanhou
  1

• freebayes stuck at a certain position

  #800 opened 4 months ago by emilydolivo97
  2

• alterations next to deletion not considered in alt allele

  #811 opened 4 months ago by FelixMoelder
  0

• Clarification on skip-coverage parameter

  #798 opened 4 months ago by CosteaPaul
  2

• Improving freebayes Performance for Nanopore Sequencing Data

  #795 opened 5 months ago by QuentinPerriere
  3

• Calling genotypes using RNA-seq data

  #797 opened 5 months ago by desmodus1984
  2

• Statically linked binary for freebayes 1.3.8 are missing

  #809 opened 5 months ago by marc-sturm
  0

• variant calling

  #791 opened 5 months ago by DaliBAmor
  4

• Overlapping read pairs question

  #783 opened 7 months ago by emmecola
  2

• Can't access mailing group - banned content

  #805 opened 7 months ago by mcjmigdal
  0

• Two adjacent SNPs reported rather then a MNP?

  #804 opened 7 months ago by Jesspalmer92
  0

• Assertion '__n < this->size()' failed. Error when running freebayes

  #796 opened 9 months ago by kinchuhrithik
  6

• incorrect GQ type

  #784 opened 7 months ago by cmatKhan
  1

• vcffirstheader broken pipe freebayes-parallel

  #789 opened 8 months ago by ericmalekos
  2

• Genotype read percentages

  #780 opened 8 months ago by ceromova
  2

• parallelization of coverage_to_regions.py

  #779 opened 8 months ago by husamia
  2

• pre-built binary not available

  #770 opened 8 months ago by vappiah
  4

• Error during freebayes call for one single chromosome

  #790 opened 8 months ago by floro5
  1

• Cannot install freebayes with conda

  #769 opened 8 months ago by i-guigon
  3

• FreeBayes sudden error

  #794 opened 9 months ago by emilydolivo97
  4

• Freebayes 1.3.7 fails its build time test suite.

  #786 opened 9 months ago by nileshpatra
  1

• Incongruencies in GT assignment

  #793 opened 9 months ago by Virginia-b
  1

• Error signal 11 with some combination of files

  #788 opened 9 months ago by Knight-JChev
  1

• 'Illegal instruction' error freebayes v1.3.7

  #776 opened 10 months ago by nadjano
  5

• Multiple bases returned instead of SNPs in one of the two replicates

  #787 opened 10 months ago by NitKV
  0

• freebayes did not report variants with AC < 4?

  #785 opened 10 months ago by yzliu01
  0

• Freebayes stuck

  #774 opened 10 months ago by seynard
  3

• parsedAlternates: error while running the -@ --input -variant option

  #772 opened a year ago by usmart31
  3

• Actual full name arguments for -iXU don't seem to match --help

  #778 opened a year ago by G3N0M3
  0

• Strand bias in merge files

  #773 opened a year ago by ceromova
  2

• freebayes does not work with low values of --min-alternate-fraction 0

  #777 opened a year ago by friburgo-moc
  0

• BA.2.86 SRR25750759 ins21608 call surprisingly dependent --min-alternate-fraction parameter

  #775 opened a year ago by krobison13
  2

• very slow process

  #766 opened a year ago by lmanchon
  3

• genotype calling are not consistent with RO and AO number

  #768 opened 2 years ago by suncpark
  1

• ARM NEON build fails: undefined reference to rans_compress_O0_32x16_neon in bundled htslib

  #767 opened 2 years ago by buildmaster0
  3