aghozlane

Bioinformatician interested in metagenomics and structural bioinformatics

Institut PasteurParis

Pinned Repositories

agc-tp
Language:Python00
ape
Language:R00
masque
Metagenomic AnalySis with QUantitative pipEline
Language:Python123
metaboflux
Metaboflux allows to predict the flux distribution in a metabolic network. It is based on Petri nets.
Language:C20
pcm
A 3D-based method to annotate resistance genes
Language:Roff82
python-sqlite3-backup
Sqlite3 online API CPython implementation module: http://www.sqlite.org/c3ref/backup_finish.html
Language:C10
shaman
SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
Language:R13 3 38
spasm
Language:Python3 2 01
split_fasta
Split fasta file in multiple files depending on the size or on your will.
Language:Python2 2 01
meteor
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Language:Python7 3 260

aghozlane's Repositories

aghozlane/shaman
SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
Language:R13 3 38
aghozlane/masque
Metagenomic AnalySis with QUantitative pipEline
Language:Python123
aghozlane/pcm
A 3D-based method to annotate resistance genes
Language:Roff82
aghozlane/agc-tp
Language:Python00
aghozlane/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell
aghozlane/biomformatshaman
Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5)
Language:R
aghozlane/chamelon
Language:C
aghozlane/check_plagiarism
Language:Python
aghozlane/d3heatmap
A D3.js-based heatmap htmlwidget for R
Language:HTML
aghozlane/d3vennR
R htmlwidget for d3.js venn diagrams from Ben Frederickson (@benfred)
Language:R
aghozlane/debruijn-tp
Language:Python4
aghozlane/DESeq2shaman
Language:R
aghozlane/docker_shaman
Script to create a shaman docker
Language:Dockerfile1
aghozlane/docker_shaman_dev
Language:Dockerfile
aghozlane/geneprediction-tp
Language:Python2 0
aghozlane/get_sequence_length
Language:Python2 0
aghozlane/gisaid-curation
Language:Python1 0
aghozlane/github-actions-for-packages
Language:JavaScript2 0
aghozlane/grab_sequence
Language:Python
aghozlane/KronaR
add Krona to Shiny
Language:JavaScript1 0
aghozlane/KronaRShy
wrapper shyny app to Krona
Language:R2 0
aghozlane/PhyloTreeMetaR
Phylocanvas to R
Language:JavaScript
aghozlane/rAmCharts
Language:HTML
aghozlane/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
Language:Nextflow
aghozlane/rNVD3shaman
Interactive Charts from R using NVD3.js
Language:JavaScript
aghozlane/shaman_bioblend
Shaman bioblend communicate with galaxy to send data from SHAMAN
Language:Python2 0
aghozlane/shinydashboardshaman
Shiny Dashboarding framework
Language:CSS
aghozlane/spyne
Language:Python
aghozlane/taxadb
:hatching_chick: locally query the ncbi taxonomy
aghozlane/treeWeightD3
display a weight tree with D3 in R
Language:JavaScript