aghozlane
Bioinformatician interested in metagenomics and structural bioinformatics
Institut PasteurParis
Pinned Repositories
agc-tp
ape
masque
Metagenomic AnalySis with QUantitative pipEline
metaboflux
Metaboflux allows to predict the flux distribution in a metabolic network. It is based on Petri nets.
pcm
A 3D-based method to annotate resistance genes
python-sqlite3-backup
Sqlite3 online API CPython implementation module: http://www.sqlite.org/c3ref/backup_finish.html
shaman
SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
spasm
split_fasta
Split fasta file in multiple files depending on the size or on your will.
meteor
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
aghozlane's Repositories
aghozlane/shaman
SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
aghozlane/masque
Metagenomic AnalySis with QUantitative pipEline
aghozlane/pcm
A 3D-based method to annotate resistance genes
aghozlane/agc-tp
aghozlane/bioconda-recipes
Conda recipes for the bioconda channel.
aghozlane/biomformatshaman
Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5)
aghozlane/chamelon
aghozlane/check_plagiarism
aghozlane/d3heatmap
A D3.js-based heatmap htmlwidget for R
aghozlane/d3vennR
R htmlwidget for d3.js venn diagrams from Ben Frederickson (@benfred)
aghozlane/debruijn-tp
aghozlane/DESeq2shaman
aghozlane/docker_shaman
Script to create a shaman docker
aghozlane/docker_shaman_dev
aghozlane/geneprediction-tp
aghozlane/get_sequence_length
aghozlane/gisaid-curation
aghozlane/github-actions-for-packages
aghozlane/grab_sequence
aghozlane/KronaR
add Krona to Shiny
aghozlane/KronaRShy
wrapper shyny app to Krona
aghozlane/PhyloTreeMetaR
Phylocanvas to R
aghozlane/rAmCharts
aghozlane/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
aghozlane/rNVD3shaman
Interactive Charts from R using NVD3.js
aghozlane/shaman_bioblend
Shaman bioblend communicate with galaxy to send data from SHAMAN
aghozlane/shinydashboardshaman
Shiny Dashboarding framework
aghozlane/spyne
aghozlane/taxadb
:hatching_chick: locally query the ncbi taxonomy
aghozlane/treeWeightD3
display a weight tree with D3 in R