standage
Husband, father, scholar, scientist, programmer, lapsed musician, flipper of pancakes, baker of biscuits.
Frederick, MD
Pinned Repositories
MicroHapDB
Portable database of microhaplotype marker and allele frequency data
AEGeAn
Integrated toolkit for analysis and evaluation of annotated genomes
pdom-genome-project
Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana University
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
kevlar
Reference-free variant discovery in large eukaryotic genomes
cli-tutorial
Tutorial on "Designing command-line interfaces (CLIs) for scientific software" intended for scientists with beginner-level skills in programming and UNIX/Linux.
genhub
Explore eukaryotic genome composition and organization with iLoci
kmer-ology
sequniq
tag
Genome annotation data analysis and management implemented in pure Python
standage's Repositories
standage/tag
Genome annotation data analysis and management implemented in pure Python
standage/genhub
Explore eukaryotic genome composition and organization with iLoci
standage/kmer-ology
standage/cli-tutorial
Tutorial on "Designing command-line interfaces (CLIs) for scientific software" intended for scientists with beginner-level skills in programming and UNIX/Linux.
standage/standage.github.io
The internet home of Daniel S. Standage
standage/perly-kmers-2018-12-18
Demo for teaching git/Github
standage/arioc-troubleshoot
standage/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
standage/contra
standage/dept
Differential Expression Permutation Testing
standage/die_roll_dists
standage/genomics-workshop
standage/HAWK
Hitting associations with k-mers
standage/iLoci_Lai2020
Procedures and data for the iLoci study described in Lai et al. (2020)
standage/InSilicoSeq
:rocket: A sequencing simulator
standage/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
standage/Liftoff
An accurate GFF3/GTF lift over pipeline
standage/Mash
Fast genome and metagenome distance estimation using MinHash
standage/minhash-demo
standage/mRNAmarkup
Evaluation and annotation of assembled transcripts
standage/mysqlbinder
standage/perly-kmers
Demo for teaching git/Github
standage/pytest-issue-4404
standage/referenceseeker
Rapid determination of appropriate reference genomes.
standage/shell_tricks_workshop_2020-01-31
standage/snakemake_tutorial_2019-04-24
standage/snakemod
standage/umngqusho
standage/with-capsys-example
pytest-dev/pytest issue #5197
standage/wrangling-genomics