standage
Husband, father, scholar, scientist, programmer, lapsed musician, flipper of pancakes, baker of biscuits.
Frederick, MD
Pinned Repositories
MicroHapDB
Portable database of microhaplotype marker and allele frequency data
AEGeAn
Integrated toolkit for analysis and evaluation of annotated genomes
pdom-genome-project
Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana University
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
kevlar
Reference-free variant discovery in large eukaryotic genomes
cli-tutorial
Tutorial on "Designing command-line interfaces (CLIs) for scientific software" intended for scientists with beginner-level skills in programming and UNIX/Linux.
genhub
Explore eukaryotic genome composition and organization with iLoci
kmer-ology
sequniq
tag
Genome annotation data analysis and management implemented in pure Python
standage's Repositories
standage/sequniq
standage/cgs-s16
Computational Genomics Lab Course, Indiana University, 2016
standage/weather-IL
standage/adj_iiloci
standage/chlorophyta
standage/christmas2015
standage/daphnia-iloci
standage/diff-exp
Describes a differential expression analysis of the P. dominula transcriptome
standage/dissertation
standage/EmexAssemblyMay2016
standage/genconflib
LDS General Conference
standage/ghp-import
Easily import docs to your gh-pages branch.
standage/HymHub
A data resource supporting social insect comparative genomics research
standage/ilocus-manifest
standage/ilocus-robustness
standage/ilocus-shuffle
standage/lab-notebook-demo-oct2015
Some really useful description would go here
standage/pdom-genome-breakdown
standage/pdomgenomeproject.github.io
standage/pelican-ipynb
Pelican plugin for blogging with Jupyter/IPython Notebooks
standage/shell-iu2015
Introductory Shell (Bioinformatics Clinic @ IU, August 2015)
standage/SlidingWindowSandbox
Undergrad research programming exercise
standage/smel-aug2015
standage/smhasher
Automatically exported from code.google.com/p/smhasher
standage/speck-benchmarks
Benchmarking scripts for speck
standage/spreadsheet-ecology-lesson
This repository contains Data Carpentry lessons on using spreadsheets for data wrangling.
standage/TRegGA
Targeted reference-guided genome assembly for comparative rice genomics
standage/xGDBvm
Code for the xGDBvm iPlant Atmosphere enabled genome annotation platform
standage/xgdbvm-rubella
standage/zaok