dib-lab/khmer

Issues

• khmer is unmaintained. what now?

  #1928 opened 6 months ago by ctb
  4

• Installation fails with Python 3.12

  #1927 opened 8 months ago by mikemc
  3

• https//canadatechmanufacturing

  #1924 opened 10 months ago by Canadatechmanufacturing
  0

• Plaid Id

  #1926 opened 10 months ago by Canadatechmanufacturing
  0

• Plaid Id

  #1925 opened 10 months ago by Canadatechmanufacturing
  0

• New count-min estimator

  #1921 opened a year ago by jianshu93
  0

• cppcheck is not reporting the many of the warnings which falls under style option/category

  #1920 opened 2 years ago by nkantesh
  1

• LICENSE bug report

  #1915 opened 3 years ago by hyandell
  2

• Result differences from input bias

  #1918 opened 2 years ago by JuantonioMS
  3

• normalize-by-median.py the total of the reads indicated in the report does not match the input

  #1916 opened 3 years ago by mainavienne
  0

• Error when Interleaving data

  #1914 opened 4 years ago by howla1ke
  1

• load-graph.py runtime

  #1911 opened 4 years ago by Mewgia
  1

• Error in khmer installation

  #1909 opened 4 years ago by HM-Anas
  0

• How to export kmer abundances?

  #1862 opened 7 years ago by olgabot
  7

• script for digital normalization of shotgun mategenomic data

  #1907 opened 4 years ago by mars188
  8

• Malformed citation file

  #1906 opened 5 years ago by Lyannic
  0

• Is the normalize-by-median.py script deterministic?

  #1905 opened 5 years ago by zmunro
  2

• Khmer (specifically `reverse_complement`) only intended for upper-case sequences?

  #1904 opened 5 years ago by dkoslicki
  2

• Screed DeprecationWarning (Python 3.9)

  #1903 opened 5 years ago by jvivian-atreca
  3

• Normalize-by-median.py script as a module

  #1901 opened 5 years ago by zmunro
  1

• Filtering out reads with low-abundance k-mers (contaminant reads)

  #1899 opened 5 years ago by GA-Goig
  4

• Is a nodegraph a bloom filter?

  #1898 opened 5 years ago by olgabot
  3

• Cannot load Nodegraph from file

  #1897 opened 5 years ago by olgabot
  3

• Convert fasta into a Numeric Summarization Vector (NSV)

  #1895 opened 5 years ago by solshiferaw
  2

• Hi Solshi!

  #1896 opened 5 years ago by solshiferaw
  1

• Is there a way to extract kmers from abundance-dist?

  #1894 opened 5 years ago by snafees
  1

• k-mer counts by position/nucleotide coverage

  #1893 opened 5 years ago by blue-moon22
  4

• Where can I find documentation on Countgraph ?

  #1892 opened 5 years ago by Nortalle
  1

• Publish v3 alpha/beta docs

  #1891 opened 6 years ago by mr-c
  0

• Can I get the detailed K-mer abundance information?

  #1890 opened 6 years ago by ZhuangZK
  2

• Do not consider reverse complements in kmer counts

  #1889 opened 6 years ago by jjtapia
  1

• Proper Cython support

  #1886 opened 6 years ago by standage
  0

• Add -q flag to interleave-reads.py and extract-paired-reads.py

  #1883 opened 6 years ago by halexand
  1

• Need Help -

  #1880 opened 6 years ago by taranglute
  0

• No local packages or download links found for pytest-runner

  #1879 opened 6 years ago by LujingF
  1

• Suggested parameters for super-deeply (~2 billion reads) sequenced genomes?

  #1878 opened 6 years ago by olgabot
  0

• how to read two fastq files(paired fastq file) in the example/consume.cc

  #1876 opened 6 years ago by lzhLab
  1

• Read attributes inaccessible via multiprocessing pool

  #1877 opened 6 years ago by dkoslicki
  0

• Add khmer as module to MultiQC

  #1875 opened 6 years ago by olgabot
  1

• add khmer 2.x compat functions back in

  #1861 opened 7 years ago by ctb
  4

• Installation error

  #1860 opened 7 years ago by tonyhqanguyen
  4

• Temporary files from trim-low-abund.py

  #1870 opened 7 years ago by olgabot
  5

• implement duecredit?

  #1868 opened 7 years ago by ctb
  0

• unique-kmers.py can produce division by zero

  #1856 opened 7 years ago by bwlang
  1

• trim-low-abund.py fails with zero exit status: graph structure is too small

  #1852 opened 7 years ago by fungs
  6

• interleave-reads.py fails with zero exit status: ERROR: This doesn't look like paired data!

  #1853 opened 7 years ago by fungs
  4

• interleave-reads.py fails with differing metadata for read pairs

  #1854 opened 7 years ago by fungs
  8

• cannot import name 'version'

  #1850 opened 7 years ago by khuch123
  1

• make libtest no longer tested, and is broken

  #1849 opened 7 years ago by mr-c
  1

• Command: k-mer abundance histogram

  #1846 opened 7 years ago by taranglute
  1