Pinned Repositories
2016-ilo-binder
2016-ilo-rtd
In lab learning opportunity: Read the Docs
2016-metagenomics-sio
Metagenomics workshop at Scripps Institute of Oceanography
2016-SIO-Workshop
Scripps Institution of Oceanography Metagenomics Workshop
2017-sourmash-revindex
Alexander_CV
BUSCO-MAG-Phylogeny
Construction of concatenated gene tree from BUSCO genes
Ehux_HD
Reanalysis_OpEd
tara-sourmash
halexand's Repositories
halexand/Reanalysis_OpEd
halexand/Alexander_CV
halexand/BUSCO-MAG-Phylogeny
Construction of concatenated gene tree from BUSCO genes
halexand/tara-sourmash
halexand/2017-sourmash-revindex
halexand/2018-02-03-swc-antarctica
halexand/2020-swc-python
Some simple plotting in python with Gap Minder
halexand/2020-woodshole-gettoknowyou
halexand/2023-Lab-GitHub
GitHub Lab
halexand/academic-kickstart
Easily create a beautiful website using Academic and Hugo
halexand/atlas
:earth_americas: ATLAS - workflows for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data.
halexand/biovcnet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
halexand/eukhesit-annotate
halexand/exRcise
Randomly generate and run a workout in R
halexand/FlowCam-Phaeo-Analysis
Image processing to optimize automatic classification of Phaeocystis colonies from FlowCam
halexand/halexand.github.io
Homepage
halexand/HizWiz
halexand/ilebras.github.io
halexand/illo-ha-doc
halexand/mag-abundance
Quick Snakemake to calculate MAG abundances
halexand/MAGpy
Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
halexand/poole
The Jekyll Butler.
halexand/py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
halexand/shell-genomics
This lesson is undergoing development at https://github.com/data-lessons/shell-genomics. Please submit any issues or PRs there.
halexand/simple_site
Minimal tutorial on making a simple website with GitHub Pages
halexand/snakemake-workflows
Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
halexand/tara-salmon-mapping
Snakemake framework for mapping all salmon metaG and metaT reads against a set of transcripts.
halexand/tara-snakemake
halexand/wedding
H + I Wedding
halexand/wowchemy-admin
:arrow_down: Admin tool for Wowchemy Website Builder - Import Bibtex