Snakemake framework for mapping all salmon metaG and metaT reads against a set of transcripts.
Pulls and creates salmon indicies for all transcriptome files located in transcripts/ that end with .fasta. It then will map all metaT and metaG data from Tara located in directory indidcated in the config.yaml file.
To use: create a conda environment and install snakemake.
conda create -n snakemake -c bioconda -c conda-forge snakemake
conda activate snakemake