snafees
Mathematical & computational biologist interested in developing methods & tools to understand sequence-phenotype interactions.
@czbiohubSan Francisco, CA
Pinned Repositories
airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
california-county-scraper
Python Tool for Scraping Bay Area County Websites for Covid-19 Data
hello-world
ideas, thoughts, etc.
Kipoi-GWAS
kmermaid
k-mer similarity analysis pipeline.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Molecular-language-discovery-of-cell-to-cell-communication-molecules-from-RNAseq-data
ortho_seqs
Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.
primate-brain-organoid-paper
Manuscript for k-mer based comparative transcriptomics
snafees.github.io
My personal website!
snafees's Repositories
snafees/ortho_seqs
Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.
snafees/Kipoi-GWAS
snafees/kmermaid
k-mer similarity analysis pipeline.
snafees/Molecular-language-discovery-of-cell-to-cell-communication-molecules-from-RNAseq-data
snafees/primate-brain-organoid-paper
Manuscript for k-mer based comparative transcriptomics
snafees/snafees.github.io
My personal website!
snafees/airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
snafees/california-county-scraper
Python Tool for Scraping Bay Area County Websites for Covid-19 Data
snafees/hello-world
ideas, thoughts, etc.
snafees/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
snafees/nf-core_website
Code and files for the main nf-core website.
snafees/openconnect-gp-okta
snafees/python
snafees/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
snafees/Spid.jl
snafees/test-datasets
Test data to be used for automated testing with the nf-core pipelines
snafees/testVM
test repo
snafees/usher_wiki
docs holder for usher wiki