dna
There are 779 repositories under dna topic.
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
broadinstitute/gatk
Official code repository for GATK versions 4 and up
galaxyproject/galaxy
Data intensive science for everyone.
vgteam/vg
tools for working with genome variation graphs
google/nucleus
Python and C++ code for reading and writing genomics data.
dib-lab/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
bebop/poly
A Go package for engineering organisms.
pallada-92/dna-3d-engine
3d engine implementation in DNA code!
mdshw5/pyfaidx
Efficient pythonic random access to fasta subsequences
RosettaCommons/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
instadeepai/nucleotide-transformer
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
SupportIntelligence/Icewater
16,432 Free Yara rules created by
FelixKrueger/Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
lightdock/lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
samtools/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
chanzuckerberg/shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
BioJulia/Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
lmdu/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
MAGICS-LAB/DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
ugeneunipro/ugene
UGENE is free open-source cross-platform bioinformatics software
nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
songlab-cal/gpn
Genomic Pre-trained Network
BjornFJohansson/pydna
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
AIRI-Institute/GENA_LM
GENA-LM is a transformer masked language model trained on human DNA sequence.
apriha/lineage
tools for genetic genealogy and the analysis of consumer DNA test results
VerisimilitudeX/DNAnalyzer
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
biologyguy/BuddySuite
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
marrink-lab/polyply_1.0
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
cslarsen/arv
A fast 23andMe DNA parser and inferrer for Python
plashchynski/awesome-genetics
A curated list of awesome personal genomics software, libraries, and educational resources.
nosvagor/dotfiles
🍙 my Personalized Development Environment [PDE]
ratschlab/metagraph
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
google/deepsomatic
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.