Issues
- 3
Throw an error "error: trying to access a snarl tree node of the wrong type" in `haplotypes`
#4381 opened by wjwei-handsome - 0
- 1
Any option like BWA MEM '-C'?
#4370 opened by alshai - 1
The Amazing Uninjectable SAM
#4379 opened by adamnovak - 5
Get input file error
#4382 opened by OZTaekOppa - 0
vg pack error
#4384 opened by JONGHOLEE-myrrh - 8
- 3
`vg convert --vg-algorithm` loses start coordinates of paths in its W lines
#4377 opened by zhangyixing3 - 12
Giraffe alignment is very slow and produces warning[vg::Watchdog] messages unless rescue is disabled
#4368 opened by polchan - 0
Release vg v1.60.0
#4374 opened by adamnovak - 1
Release vg v1.59.0
#4325 opened by adamnovak - 1
Right method to annotate genes on pangenome graph
#4357 opened by yeeus - 0
Giraffe needs to better deal with systems where multiple processes opening the distance index causes slowdowns
#4369 opened by adamnovak - 4
How do different methods affect precision?
#4366 opened by zhengluo-lz - 5
About the usage of vg deconstruct
#4356 opened by Tonitsk8264 - 4
- 2
vg call report missing allele
#4358 opened by Han-Cao - 2
vg call error
#4360 opened by aaaniich - 3
GAF nodes do not correspond to VCF nodes
#4340 opened by m-bogaerts - 0
Turn off surjection anchor limit by default
#4336 opened by adamnovak - 2
- 4
Protobuf errors mapping
#4342 opened by jeizenga - 5
- 2
Fastq analysis in euka
#4341 opened by NaturalKiller-code - 1
vg autoindex --workflow mpmap
#4339 opened by jwli-code - 1
Bump necessary magic numbers for long-read index types
#4337 opened by adamnovak - 0
Incorrect substitution sequences in `vg inject`
#4324 opened by adamnovak - 3
GAF file empty with vg giraffe
#4331 opened by m-bogaerts - 0
Low-complexity pruning is slow in surjection
#4332 opened by adamnovak - 1
Is it possible to regenotype a VCF using giraffe?
#4330 opened by rickymagner - 3
- 4
vg convert unable to write rGFA tags
#4326 opened by Han-Cao - 4
- 0
Release vg v1.58.0
#4299 opened by adamnovak - 2
vg giraffe mapping slow when vg autoindex return a waring `distance index uses oversized snarls, which may make mapping slow`
#4321 opened by Wenhai-Zhang - 1
- 0
Giraffe can crash when multi-mapping paired-end reads without a fragment lenght distribution
#4315 opened by adamnovak - 1
About vg call -a -A
#4317 opened by JiadongZHONG - 1
Fix misplaced indel edits
#4320 opened by adamnovak - 0
- 1
- 3
vg pack signal 6 error
#4307 opened by vetsuisse-unibe - 3
VG autoindex not working with PGGB GFA
#4302 opened by KopalliV - 1
vg augment forwardize_breakpoints error
#4305 opened by genesok - 3
- 1
- 5
Construct a generation-level pan-genome
#4295 opened by jwli-code - 5
Mapping paired reads w/ giraffe, no EOF marker, job stalls, exit code 79
#4294 opened by AlphaJulietAlpha - 1
ERROR vg autoindex :Tag "transcript_id" not found in attributes (line 145). ERROR: Tag "transcript_id" not found in attributes (line 4). ERROR: No transcripts parsed (remember to set feature type "-y" in vg rna or "-f" in vg autoindex)
#4292 opened by 08li20 - 2
short read giraffe alignment crashes most of the time, works on a few random samples - Signal 11
#4290 opened by jespindel01