genome-graph
There are 17 repositories under genome-graph topic.
vgteam/vg
tools for working with genome variation graphs
lh3/minigraph
Sequence-to-graph mapper and graph generator
lh3/gfatools
Tools for manipulating sequence graphs in the GFA and rGFA formats
mcveanlab/mccortex
De novo genome assembly and multisample variant calling
iqbal-lab-org/gramtools
Genome inference from a population reference graph
MoMI-G/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
BioJulia/GenomeGraphs.jl
A modern genomics framework for julia
cccnrc/plot-VCF
visual analysis of your VCF files
ChaissonLab/danbing-tk
Toolkit for VNTR genotyping and repeat-pan genome graph construction
edawson/svaha2
Linear-time, low-memory construction of variation graphs
ratschlab/genome_graph_annotation
Sparse Binary Relation Representations for Genome Graph Annotation
JerryPan2718/Microbiome-PTR
Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
RolandFaure/GenomeTailor
Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly
jachansantiago/vg_recal
This is experiment to measure performance in vg recalibrate, testing different models.
cartoonist/gcsa-locate
Locate k-mers in variation graphs using GCSA2
jlboat/VGTool
A tool for modelling graphs of genetic variation.