lh3/gfatools

Issues

• Online GfaViewer on gfaServer

  #32 opened a year ago by hcsun1
  5

• conversion of GFA to rGFA

  #23 opened 3 years ago by gsc74
  4

• gfa2fa - what happens when using the -s flag

  #35 opened 3 months ago by mb47
  0

• Can rGFA be used to liftover coordinates between genomes?

  #34 opened 4 months ago by adadiehl
  0

• gfatools view to subset a gfa file

  #33 opened a year ago by Dkyuan
  2

• The question about format of fasta using gfatoos gfa2fa

  #31 opened a year ago by Daishoulu
  0

• can I convert single line path from complex structures into fasta files

  #19 opened 2 years ago by zhoudreames
  1

• Using `gfatools asm`

  #30 opened 2 years ago by aafshinfard
  0

• How to convert fastG to GFA?

  #29 opened 2 years ago by tarunaaggarwal
  0

• meaning of NM:i:5 AS:f:56.3 dv:f:0.0694444 id:f:0.930556 cg:Z:4=1X2=1I38=1D5=1I5=1X13=?

  #28 opened 2 years ago by lingliao
  2

• Can I extract path sequences from GFA or rGFA by pathname？

  #27 opened 2 years ago by 8banzhuan
  0

• "A" line produced by gfatools asm

  #26 opened 2 years ago by yatsukha
  0

• Invalid GAF is produced

  #25 opened 2 years ago by asl
  1

• gfatools bubble doesn't work on GFA after bubble popping with gfatools asm

  #22 opened 3 years ago by lstevens17
  0

• Add a License

  #17 opened 4 years ago by natir
  4

• gfa view subgraph radius definition

  #15 opened 4 years ago by ggonnella
  4

• About "--bf" the bloom filter

  #21 opened 3 years ago by cyr20040123
  0

• Standalone libraries to work with GFA

  #3 opened 5 years ago by lh3
  4

• GFA2 format from miniasm not properly converting to fasta

  #20 opened 3 years ago by Sandman2127
  1

• Is there support for translation between stable coordinate and segment/local coordinate for GAF?

  #16 opened 4 years ago by SHuang-Broad
  1

• Fields in bubble output

  #13 opened 4 years ago by egoltsman
  1

• blacklisting region from a region file

  #14 opened 4 years ago by chklopp
  0

• paths from rGFA

  #11 opened 4 years ago by egoltsman
  4

• Format clarification

  #12 opened 4 years ago by fbemm
  2

• Cigar strings altered after extracting subgraph

  #10 opened 5 years ago by rlorigro
  0

• Logic of taking the subset within a given radius

  #8 opened 5 years ago by snurk
  8

• Lost segment sequences while producing unitigs

  #9 opened 5 years ago by snurk
  1

• Bug in producing unitig graph

  #7 opened 5 years ago by snurk
  0

• Subgraph option question

  #6 opened 5 years ago by snurk
  1

• Bug in bubble popping algorithm

  #5 opened 5 years ago by snurk
  1

• Conflicting types when running make

  #4 opened 5 years ago by MBMumphrey
  1

• Defining Walk/W-lines in GFA1

  #2 opened 5 years ago by lh3
  19

• rGFA vs vg's path model

  #1 opened 5 years ago by lh3
  4