snurk

Oxford Nanopore TechnologiesOxford, UK

Pinned Repositories

spades
SPAdes Genome Assembler
Language:C++772 32 1.2k139
STRONG
Strain Resolution ON Graphs
Language:Python47 8 1169
rukki
Extracting paths from assembly graphs
Language:Rust22 7 290
bacValidation
BAC-based validation of assemblies
Language:C0 0 00
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Language:C++0 0 00
canu
A single molecule sequence assembler for genomes large and small.
Language:C++0 0 00
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
Language:Makefile0 0 00
gfacpp
Language:C++0 1 00
GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
Language:C++0 0 00
sg_sandbox
Experimental String Graph construction and processing
Language:Python25 4 21

snurk's Repositories

snurk/sg_sandbox
Experimental String Graph construction and processing
Language:Python25 4 21
snurk/bacValidation
BAC-based validation of assemblies
Language:C0 0 00
snurk/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Language:C++0 0 00
snurk/canu
A single molecule sequence assembler for genomes large and small.
Language:C++0 0 00
snurk/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
Language:Makefile0 0 00
snurk/gfacpp
Language:C++0 1 00
snurk/GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
Language:C++0 0 00
snurk/GraphAligner
Language:C++0 0 00
snurk/MashMap
A fast approximate aligner for long DNA sequences
Language:C++0 1 00
snurk/meta-strains
Language:Jupyter Notebook3 0
snurk/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Language:TeX0 0
snurk/perbase
Per-base per-nucleotide depth analysis
Language:Rust
snurk/quast
Genome assembly evaluation tool
Language:AMPL0 0
snurk/spades
SPAdes Genome Assembler
Language:C++
snurk/tangle-resolution
Language:Python0 0