snurk

snurk's Stars

• bluenote-1577/devider

  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs

  Language:Rust191

• jermp/data_compression_course

  A Crash Course on Data Compression.

  Language:C++30124

• brianpetro/obsidian-smart-connections

  Chat with your notes & see links to related content with AI embeddings. Use local models or 100+ via APIs like Claude, Gemini, ChatGPT & Llama 3

  Language:JavaScript3.1k191

• logancyang/obsidian-copilot

  THE Copilot in Obsidian

  Language:TypeScript3.4k247

• lh3/srf

  SRF: Satellite Repeat Finder

  Language:TeX896

• stjude/indelPost

  Python library for simple and complex indels.

  Language:C133

• wdecoster/STRdust

  Tandem repeat genotyping from long reads

  Language:Rust82

• TrinityCTAT/CTAT-LR-fusion

  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

  Language:Perl15

• wenjiaking/IFDlong

  Language:R21

• cafelton/FLAIR-fusion

  Language:Python12

• Maggi-Chen/FusionSeeker

  A gene fusion caller for long-read transcriptome sequencing data.

  Language:Python174

• bluenote-1577/sylph

  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

  Language:Rust2046

• thegenemyers/FASTGA

  Pairwise whole genome aligner

  Language:C1436

• thegenemyers/ONEcode

  1-code framework: docs, C-library, and tools

  Language:C153

• kcleal/gw

  Genome browser and variant annotation

  Language:C++2898

• marbl/ModDotPlot

  Language:Python12610

• AlgoLab/RecGraph

  Optimal sequence-to-graph alignment with recombinations

  Language:Rust252

• pjedge/longshot

  diploid SNV caller for error-prone reads

  Language:Rust19426

• jts/smrest

  Tumour-only somatic mutation calling using long reads

  Language:Rust252

• google/deeppolisher

  Transformer-based sequence correction method for genome assembly polishing

  Language:Jupyter Notebook403

• gymrek-lab/LongTR

  Tandem repeat genotyping with long reads

  Language:C++271

• twolinin/longphase

  Language:C1079

• brentp/spacepile

  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.

  Language:Rust14

• marbl/verkko

  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

  Language:Python31430

• TimD1/vcfdist

  vcfdist: Accurately benchmarking phased variant calls

  Language:C++797

• c-zhou/oatk

  A organelle de novo genome assembly toolkit

  Language:C515

• at-cg/RAFT

  Language:C++211

• lh3/tabtk

  Toolkit for processing TAB-delimited format

  Language:C6012

• ACEnglish/truvari

  Structural variant toolkit for VCFs

  Language:Python33449

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust20113