Issues
- 0
Support of polyploidy
#29 opened by baozg - 0
bioconda release
#28 opened by snurk - 0
Configuration
#6 opened by snurk - 0
Assign all nodes in localized tangles
#27 opened by snurk - 0
Improve gap size estimates
#26 opened by snurk - 1
Think of a more 'local' loop check
#4 opened by snurk - 0
Marker density threshold unused
#21 opened by snurk - 0
File with node assignments as input
#25 opened by snurk - 0
Gap closing can lead to issues in rare cases
#24 opened by snurk - 0
Tie issue-len to trusted-len
#23 opened by snurk - 2
Integration test cases
#7 opened by snurk - 0
Improve gap filling logic
#22 opened by snurk - 0
Generalized haplotype gap patching
#20 opened by snurk - 1
Add non-redundant SCC output
#3 opened by snurk - 0
Add jumping across localized tangles
#9 opened by snurk - 0
Add 'broken bubble' patching for trio
#10 opened by snurk - 0
Add small bubble jumping to trio
#14 opened by snurk - 0
Switch to gapped paths
#16 opened by snurk - 0
Add gap size estimation for all cases
#19 opened by snurk - 0
Support repeated link records
#18 opened by snurk - 1
- 0
Add iterators for outgoing/incoming
#15 opened by snurk - 0
Het-mers instead for long node homology?
#13 opened by snurk - 0
Think about using het-mers
#12 opened by snurk - 0
Maybe borrow something from pangenomic graphs
#11 opened by snurk - 0
Add heterozygous node classification
#2 opened by snurk - 0
Implement superbubble and sb-chain search
#1 opened by snurk - 0
github CI integration
#8 opened by snurk - 0
Maybe add rule to choose between 'filling node' vs 'single link' using link coverage
#5 opened by snurk