Issues
- 6
Input requirement for hybrid assembly
#1340 opened by marinachen - 0
- 1
== Error == system call for: spades-core, finished abnormally, OS return value: -9
#1338 opened by RJEGR - 5
OS return value: -9
#1336 opened by Wanli-HE - 2
Resuming Hybrid Assembly fails
#1335 opened by byronverz9 - 4
SPAdes: Running since 4 days
#1333 opened by pratibha-kadam - 1
Spades finished abnormally
#1332 opened by stopguessingwho1am - 0
Python warning on 3.12
#1320 opened by asl - 4
Error == system call for: config.info
#1331 opened by anaalmeidasantos - 1
Incompatible licenses
#1330 opened by pgrt - 0
Creating a Continuous Contig from SPAde Output
#1328 opened by Abrar-co - 1
Memory Limitation/ Finished abnormally
#1323 opened by ap790 - 1
Anaconda cannot download new version of spades
#1327 opened by stopguessingwho1am - 0
SyntaxWarning: invalid escape sequence '\d' return [atoi(c) for c in re.split("(\d+)", text)]
#1326 opened by sheikki - 0
Build system should use available deps instead of externals when they are available
#1325 opened by bzizou - 6
'Failed to limit memory to' error on Mac M3 Max, while SPAdes runs normally via a virtual Linux machine on the same computer.
#1324 opened by mkazanov - 1
SPAdes: K21,33,55,77,99,127, didtn't generate any data in files: scaffolds.gfa and contigs.fasta
#1322 opened by 02Julie2023 - 2
SPAdes 4.0.0 incorrect Python version detection?
#1319 opened by Kroh-N - 1
spades error #255 unequal amount of reads
#1318 opened by ainurftn - 3
No error code metaspades just terminate after 13 hours of running kmer counting
#1317 opened by stopguessingwho1am - 1
abnormally, OS return value: -6
#1315 opened by unique379r - 2
Error: spades-hammer, OS return value: 1
#1313 opened by osvatic - 2
After upgrading to python3.12 : Error importing LooseVersion from distutils. Now needs to come directly from looseversion.
#1266 opened by haslamdb - 1
Checklist for SPAdes 4.0 release
#1296 opened by asl - 5
spades-4.0.0 :: some test failure
#1312 opened by EricDeveaud - 2
Update changelog for 4.0 release
#1301 opened by asl - 1
Finalize manual for 4.0
#1302 opened by asl - 4
can not restart from last
#1298 opened by catslu - 0
Document gfa-split
#1295 opened by asl - 0
Document SRA input
#1303 opened by asl - 8
How to use spades operate a fasta file, especially simulated reads in fasta format from badread?
#1305 opened by SoSongzhi - 1
There is no contig.fasta in my output dir
#1306 opened by SoSongzhi - 0
Update `/usr/bin/env python` shebangs
#1294 opened by asl - 1
== Error == system call for: "['SPAdes-3.15.5-Linux/bin/spades-hammer', 'spades_test/corrected/configs/config.info']" finished abnormally, OS return value: -11
#1297 opened by Liuyw1217 - 0
- 1
OS return value: -6
#1290 opened by Nishofei - 1
finished abnormally, err code: -6
#1289 opened by davidjstudholme - 1
broken after five-day running
#1288 opened by B1991ing - 2
spades-core: /opt/conda/conda-bld/spades_1664217775513/work/src/project/spades/main.cpp:101: int main(int, char**): Assertion `cfg::get().K >= runtime_k::MIN_K && cfg::get().K < runtime_k::MAX_K' failed.finished abnormally, OS return value: -6
#1284 opened by GuillaumeDore11 - 1
Error on installing Spades on Mac M2 Chip Macbook
#1283 opened by Illynani - 1
finished abnormally
#1285 opened by Tsingsjeen - 2
system call finished abnormally, OS return value: -9
#1281 opened by almarch24 - 5
== Error == finished abnormally, OS return value: -11
#1277 opened by efe3506 - 1
Cannot allocate memory. Error code: 12
#1279 opened by ucassee - 2
Several errors: finished abnormally, OS return value: 21 None, Too many erroneous kmers, the estimates might be unreliable, Invalid kmer coverage histogram, make sure that the coverage is indeed uniform and Failed to determine erroneous kmer threshold. Threshold set to: 3
#1276 opened by Wyclif3 - 1
Error while running SPAdes
#1273 opened by sahilrishav2 - 2
Test dataset does not work, spades-hammer fails
#1272 opened by Pigrenok - 1
SPADES ERROS
#1271 opened by Longyulin22 - 2
I keep runnning into "finished abnormally, err code: -11"
#1267 opened by Wanjofu - 1
SPAdes not perform correctly issue with spades-hammer
#1268 opened by manotush