pdimens
Marine Genomics - Studying population genetics of highly migratory fishes. And side projects.
Cornell UniversityNew York
Pinned Repositories
PopGen.jl
Population Genetics in Julia
PopGenCore.jl
Core utilities for PopGen.jl, including the PopData type and file IO
2022-Tatlanticus_popgen
Repository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs
AFSworkshop2024
Materials for the AFS2024 Workshop: Communicating Research with Effective Data Visualization & Effective Storytelling
bio-bin
Handy reusable bioinformatic scripts
C.acronotus-data-2019
SNP dataset associated with Dimens et al. 2019 "A genomic assessment of movement and gene flow around the South Florida vicariance zone in the migratory coastal blacknose shark, Carcharhinus acronotus"
gust
An easy breezy whole-genome derived snp-based phylogenetic pipeline 🌪️
harpy
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
LepWrap
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
PopGenSims.jl
Create population genetics simulations
pdimens's Repositories
pdimens/harpy
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
pdimens/LepWrap
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
pdimens/bio-bin
Handy reusable bioinformatic scripts
pdimens/AFSworkshop2024
Materials for the AFS2024 Workshop: Communicating Research with Effective Data Visualization & Effective Storytelling
pdimens/PopGenSims.jl
Create population genetics simulations
pdimens/2022-Tatlanticus_popgen
Repository associated with the publication: Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs
pdimens/C.acronotus-data-2019
SNP dataset associated with Dimens et al. 2019 "A genomic assessment of movement and gene flow around the South Florida vicariance zone in the migratory coastal blacknose shark, Carcharhinus acronotus"
pdimens/haplotagging_simulations
Contains the code associated with the simulation study
pdimens/pdimens.github.io
Personal website
pdimens/gust
An easy breezy whole-genome derived snp-based phylogenetic pipeline 🌪️
pdimens/2024-Talbacares_genomic_resources
Genome assembly of the Atlantic Yellowfin Tuna (Thunnus albacares)
pdimens/2025-Tablacares_popgen
pdimens/bioconda-recipes
Conda recipes for the bioconda channel.
pdimens/dDocent
a bash pipeline for RAD sequencing
pdimens/LinkedSV
A fork that exists to create releases for conda installation purposes
pdimens/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
pdimens/shortle
A Pretty Ok Short-Read Assembly Workflow