Ex Center for Algorithmic Biotechnology

Saint Petersburg State University

Pinned Repositories

IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language:Python153 13 20013
npdtools
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
23 15 59
quast
Genome assembly evaluation tool
Language:AMPL410 41 23978
rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
Language:Python19 7 216
spades
SPAdes Genome Assembler
Language:C++763 32 1.2k138
stringdecomposer
Tool for decomposition centromeric assemblies and long reads into monomers
Language:C++34 13 82
TandemTools
Tool for assessing/improving assembly quality in extra-long tandem repeats
Language:C++45 8 105
VerityMap
Language:C++31 6 155
viralComplete
viralComplete: BLAST-based viral completeness verification
Language:Python23 14 11
viralVerify
viralVerify: viral contig verification tool
Language:Python65 14 1312

Ex Center for Algorithmic Biotechnology's Repositories

ablab/spades
SPAdes Genome Assembler
Language:C++763 32 1.2k138
ablab/quast
Genome assembly evaluation tool
Language:AMPL410 41 23978
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language:Python153 13 20013
ablab/viralVerify
viralVerify: viral contig verification tool
Language:Python65 14 1312
ablab/TandemTools
Tool for assessing/improving assembly quality in extra-long tandem repeats
Language:C++45 8 105
ablab/stringdecomposer
Tool for decomposition centromeric assemblies and long reads into monomers
Language:C++34 13 82
ablab/VerityMap
Language:C++31 6 155
ablab/npdtools
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
23 15 59
ablab/viralComplete
viralComplete: BLAST-based viral completeness verification
Language:Python23 14 11
ablab/rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
Language:Python19 7 216
ablab/metaGT
Pipeline for metagenome and metatranscriptome joint assembly
Language:Nextflow18 4 62
ablab/nerpa
Language:C++14 7 23
ablab/plasmidVerify
plasmidVerify: plasmid contig verification tool
Language:Python12 5 43
ablab/graphamr
Antibiotic prediction from metagenome assembly graphs
Language:Nextflow8 2 82
ablab/HORmon
Language:Python8 5 11
ablab/orf-search
ORF search on assembly graphs
Language:Python6 11 23
ablab/quast-website
Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast
Language:HTML5 38 02
ablab/TagFinder
Language:Java4 49 01
ablab/external-tools
Language:C++3 48 11
ablab/quast_snakemake
Language:Python3 3 0
ablab/TagFinder05
Language:Java3 2 0
ablab/y-tools
Language:C++3 9 02
ablab/platform_comparison
Comparing Platforms
Language:Python2 4 11
ablab/basespace_gatk_app
Repo for creating BaseSpace Apps
Language:Python1 7 0
ablab/covid19_variation_analysis
Language:Python1 6 02
ablab/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
ablab/holy-build-box
System for building cross-distribution Linux binaries
Language:Shell1 0
ablab/metarna
Language:Python12 0
ablab/NPvis
Interactive visualizer for MS/MS fragmentation of natural products
Language:JavaScript3 2
ablab/rectangles
Language:Python39 0