chklopp
I currently work at the Department of Applied Mathematics and Informatics, @INRAE, leading Sigenae
INRAeAuzeville-Tolosane
Pinned Repositories
2020-11-13-Toulouse-online
fermikit
De novo assembly based variant calling pipeline for Illumina short reads
GARK
Check genome assembly repeat content using kmers
Hackathon_NextFlow_Nov2020
intronseeker
macassemblies
Procedure to assemble MAC genome for good quality long reads.
Manual_Assembly_purging
Procedure to manually purge genome assemblies
modify_assembly
simple script to cut, paste, reverse complement, delete contigs in an assembly
nfcore-configs
Config files used to define parameters specific to compute environments at different Institutions
process_amplicons
chklopp's Repositories
chklopp/2020-11-13-Toulouse-online
chklopp/fermikit
De novo assembly based variant calling pipeline for Illumina short reads
chklopp/GARK
Check genome assembly repeat content using kmers
chklopp/Hackathon_NextFlow_Nov2020
chklopp/intronseeker
chklopp/macassemblies
Procedure to assemble MAC genome for good quality long reads.
chklopp/Manual_Assembly_purging
Procedure to manually purge genome assemblies
chklopp/modify_assembly
simple script to cut, paste, reverse complement, delete contigs in an assembly
chklopp/nfcore-configs
Config files used to define parameters specific to compute environments at different Institutions
chklopp/process_amplicons
chklopp/ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera