Sandman2127
Computational Biologist Arrowhead Pharmaceuticals Madison, WI
Arrowhead PharmaceuticalsMadison, WI
Pinned Repositories
Bisulfite_Tools
A DNA methylation data analysis pipeline wrapper and the included programs to run BSmap 2.9 and hcDMR for Arabidopsis thaliana DNA methylation data analysis
cageseq
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
CCS
coffeeGrindMind
An arduino project to develop a time & weight based control of a coffee grinder.
ina219_i2c_micropython_driver
uses micropython 1.19.1 and basic libraries described in README.md
NTC_MF52_thermistor_micropython_driver
RPi3-Fan-Control-Circuit
Raspberry Pi3 Fan Control Circuit: uses the RPi3 and Sklearn libraries to control transistor circuit PWM with optional machine learning optimized energy control.
RpiControlInterface
A module to launch,refresh and monitor an apache server from an RPi3
sandman2127.github.io
Dean Sanders Github IO website
VCF2ArlequinDiploid
A script designed to convert GBS/RAD/DNASEQ vcf data to arlequin diploid .arp format files
Sandman2127's Repositories
Sandman2127/VCF2ArlequinDiploid
A script designed to convert GBS/RAD/DNASEQ vcf data to arlequin diploid .arp format files
Sandman2127/ina219_i2c_micropython_driver
uses micropython 1.19.1 and basic libraries described in README.md
Sandman2127/Bisulfite_Tools
A DNA methylation data analysis pipeline wrapper and the included programs to run BSmap 2.9 and hcDMR for Arabidopsis thaliana DNA methylation data analysis
Sandman2127/NTC_MF52_thermistor_micropython_driver
Sandman2127/cageseq
CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.
Sandman2127/CCS
Sandman2127/coffeeGrindMind
An arduino project to develop a time & weight based control of a coffee grinder.
Sandman2127/RPi3-Fan-Control-Circuit
Raspberry Pi3 Fan Control Circuit: uses the RPi3 and Sklearn libraries to control transistor circuit PWM with optional machine learning optimized energy control.
Sandman2127/RpiControlInterface
A module to launch,refresh and monitor an apache server from an RPi3
Sandman2127/sandman2127.github.io
Dean Sanders Github IO website
Sandman2127/CorrelateBed
An extremely simple tool for correlating regional values in bedfiles and plotting the results in a simple scatterplot
Sandman2127/COVID19-Amplicon-Sequencing-Analysis-Pipeline
A data analysis pipeline for analyzing COVID19 amplicon sequencing data in 1000's of patients simulaneously
Sandman2127/Extensible_Peak_Overlap_Tool
Sandman2127/Find_Aligned_Sequence
Sandman2127/hcDMR_caller
Calling high confidence differentially methylated regions
Sandman2127/pdfs
Sandman2127/Peak_overlap_x_TAIR_Genes_TEs
Sandman2127/rpiDetectMessageStatus
A basic Raspberry PI GPIO script for controlling onboard lights based on internal message status by interfacing with a simple transistor circuit
Sandman2127/rpiPicoLaserController
Microcontroller program for an rpi Pico (RP2040 Dual Cortex M0+ processors, 133 MHz) designed to interface in micropython to control the input current for a thorlabs CPS635R alignment laser
Sandman2127/rust-biotools
a set of simple tools I decided to write up in rust for quick access and fast operation on a variety of machines
Sandman2127/Skyline_histone_PTM_analysis
Sandman2127/TAIR_Tools
A set of scripts I designed to do epigenetics bioinformatics analysis in Arabidopsis thaliana
Sandman2127/Whole_Genome_DNA_Methylation_Plotter