Pinned Repositories
attr_hidden
Rails / ActiveRecord - Hide attributes in a model (particularly useful for Single Table Inheritance)
attrtables
System for storing, a dynamic set of entity attributes in a database
boxover_helper
A rails helper to make easier to use boxover javascript library (http://boxover.swazz.org)
fastsubtrees
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
genometools
GenomeTools genome analysis system.
gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
gfaviz
Graphical interactive tool for the visualization of sequence graphs in GFA format.
rgfa
Ruby library for handling GFA files
textformats
ggonnella's Repositories
ggonnella/gfapy
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
ggonnella/gfaviz
Graphical interactive tool for the visualization of sequence graphs in GFA format.
ggonnella/textformats
ggonnella/fastsubtrees
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
ggonnella/attrtables
System for storing, a dynamic set of entity attributes in a database
ggonnella/egcwebapp
A web application for visualizing and editing EGC data
ggonnella/multiplug
Flexible multi-language plugin system for Python
ggonnella/prenacs
Batch computing and results storage system with provenance-tracking
ggonnella/RiboPip
An alignment and analysis pipeline for Ribo-seq and RNA-seq data
ggonnella/scp-open
Open and edit a file on a remote server connected by ssh
ggonnella/snacli
Simplify writing dual use scripts for CLI and Snakemake
ggonnella/ec_finder
EcFinder: Python library and script to fuzzy search an enzyme EC number from an enzyme name
ggonnella/egc-spec
Specification for the Expected Genome Content format
ggonnella/egcgpt
Extract rules about the contents of prokaryotic genomes from scientific literature using GPT
ggonnella/egctools
Tools for handling the Expected Genome Content (EGC) Format
ggonnella/expectation_rules
A collection of expectations about the contents of prokaryotic genomes
ggonnella/fardes
Features Arrangement Description Miniformat
ggonnella/findconfig
Find a config file in XDG config paths, home directory or directories of the calling package
ggonnella/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
ggonnella/ggonnella
Config files for my GitHub profile.
ggonnella/giosc
R package with helper functions for ScRNA-seq analysis
ggonnella/git-batch-op
allows to run git repository operations on a group of repositories
ggonnella/lexpr
Lexpr: A simple logical expressions Lark-based parser
ggonnella/ntmirror
Local database mirroring NCBI taxonomy, kept up-to-date
ggonnella/pgcdo
Prokaryotic Genome Contents Definition Ontology
ggonnella/pgto
Prokaryotic Group Types Ontology
ggonnella/prost
`PROkaryote genome STatistics` (Prost): a system for the computation, storage and comparison of genomic data
ggonnella/quick-notes
Write synchronized single-lined notes from the command line
ggonnella/tabrec
Scripts for working with multiple record-type tabular files
ggonnella/urischemes
generating custom URI scheme handlers and install them