ggonnella/gfapy

Issues

• Disconnect not removing all references?

  #33 opened 3 months ago by schorlton-bugseq
  0

• can it be used to rename contig names in gff file?

  #32 opened 4 months ago by gunjanpandey
  0

• gfapy.error.NotFoundError: A link equivalent to ... does not exist

  #31 opened 6 months ago by MrTomRod
  1

• Missing coverage information after merge_linear_paths()

  #29 opened 2 years ago by jamiemcg
  0

• Improve documentation on Methods to access segments, edges, etc. by id

  #28 opened 2 years ago by nhansen
  7

• Feature: converting graphs to GFA

  #26 opened 3 years ago by aafshinfard
  1

• unhashable type: 'SegmentEnd' with `is_cut_segment`

  #27 opened 2 years ago by mir-cat
  0

• Optimization: add ability to ignore sequences when loading a GFA file

  #25 opened 3 years ago by fedarko
  6

• Setting 'or' tag in merge_linear_paths

  #24 opened 3 years ago by W-L
  1

• Taking very long to load GFA1 from file

  #23 opened 3 years ago by fawaz-dabbaghieh
  4

• 'edge_1+' is not a valid list of GFA1 segment names and orientations

  #22 opened 3 years ago by schorlton
  7

• Merging on linear paths errors

  #21 opened 3 years ago by AntoineHo
  1

• Merging linear paths : computed sequence length and computed LN differ

  #20 opened 4 years ago by AntoineHo
  2

• Compact the assembly graph [feature request]

  #9 opened 4 years ago by sjackman
  1

• Calling .complement() on GFA2 edges

  #10 opened 4 years ago by fedarko
  3

• Fill in the sequences in GFA from FASTA

  #7 opened 4 years ago by sjackman
  8

• conversion between GFA and GFA2 leaves out path tags

  #19 opened 4 years ago by egoltsman
  1

• Possible bug in captured_path.py

  #18 opened 4 years ago by egoltsman
  4

• Supporting rGFA

  #11 opened 4 years ago by ggonnella
  13

• python3 set.append not allowed

  #16 opened 4 years ago by egoltsman
  1

• linear_path error

  #15 opened 4 years ago by egoltsman
  3

• validating paths

  #14 opened 5 years ago by egoltsman
  5

• gfapy.error.FormatError: Custom tags must be lower case

  #13 opened 5 years ago by Zethson
  5

• Installation issue on Ubuntu 20.04

  #12 opened 5 years ago by moldach
  2

• gfapy-convert: has no identifier Path conversion to GFA2 failed

  #4 opened 8 years ago by sjackman
  2

• gfa-convert: custom sl:i tag ought to be LN:i

  #5 opened 8 years ago by sjackman
  5

• gfapy-validate: spurious warning (GFA 1)

  #3 opened 8 years ago by sjackman
  2

• ImportError: cannot import name '_validate_gfa_field'

  #2 opened 8 years ago by sjackman
  4

• Minimum Python version

  #1 opened 8 years ago by sjackman
  2