unhashable type: 'SegmentEnd' with `is_cut_segment`
mir-cat opened this issue · 0 comments
mir-cat commented
Hello,
I am encountering an error when attempting to use the functions graph.is_cut_segment
and graph.remove_dead_ends
where it appears that the function attempts to interate over a SegmentEnd
and fails:
EG
In [41]: graph.remove_dead_ends(1000000)
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-41-da5e655a6017> in <module>()
----> 1 graph.remove_dead_ends(1000000)
/Users/henglinm/opt/miniconda3/envs/tester/lib/python3.6/site-packages/gfapy/graph_operations/artifacts.py in remove_dead_ends(self, minlen)
34 if s.length < minlen and \
35 (c[0]==0 or c[1]==0) and \
---> 36 not self.is_cut_segment(s):
37 self.rm(s)
/Users/henglinm/opt/miniconda3/envs/tester/lib/python3.6/site-packages/gfapy/graph_operations/topology.py in is_cut_segment(self, segment)
52 for l in segment.dovetails_of_end(et):
53 start_points.add(l.other_end(\
---> 54 gfapy.SegmentEnd(segment.name, et)).inverted())
55 cc = []
56 for start_point in start_points:
TypeError: unhashable type: 'SegmentEnd'
This was performed a version 1 GFA file immediately after import. Is this only for GFA 2 files?