sjackman

I am a computational biologist (PhD), a developer of Cell Ranger and Homebrew, an open-source programmer, an avid traveller, a singer, and an enthusiastic cook.

@10xGenomicsVancouver, Canada

Pinned Repositories

abyss
:microscope: Assemble large genomes using short reads
Language:C++302 25 324101
tigmint
⛓ Correct misassemblies using linked AND long reads
Language:Python54 18 5313
homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Language:Ruby297 14 114118
GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
Language:Makefile185 32 7142
brew
🍺 The missing package manager for macOS (or Linux)
Language:Ruby39.9k 708 4.4k9.4k
docker-bio
Docker images of bioinformatics software
Language:Makefile21 6 20
dotfiles
~/.*
Language:Vim Script4 4 11
fastascripts
Manipulate FASTA files
Language:Perl30 7 210
lambdar
ƛR: Run R on AWS Lambda
Language:Makefile40 9 65
uniqtag
Abbreviate strings to short, unique identifiers
Language:R24 4 22

sjackman's Repositories

sjackman/uniqtag
Abbreviate strings to short, unique identifiers
Language:R24 4 22
sjackman/dotfiles
~/.*
Language:Vim Script4 4 11
sjackman/brew
🍺 The missing package manager for macOS
Language:Ruby3 2 0
sjackman/thesis
PhD Thesis: Efficient Assembly of Large Genomes
Language:TeX3 3 0
sjackman/plotly.rs
Plotly for Rust
Language:Rust1 1 0
sjackman/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Language:Rust1 2 0
sjackman/scales
Tools for ggplot2 scales
Language:R1 2 0
sjackman/sjackman.github.io
The personal web site of Shaun Jackman
Language:HTML1 5 128
sjackman/linuxbrew-core
:beers::penguin: Core formulae for the Linuxbrew package manager
Language:Ruby0 3 0465
sjackman/copilot-docs
Documentation for GitHub Copilot
Language:Python1 0
sjackman/criterion.rs
Statistics-driven benchmarking library for Rust
Language:Rust1 0
sjackman/flock
flock(1) locks files
Language:C2 0
sjackman/fqme
Language:Rust1 0
sjackman/glibc-bootstrap
Language:Shell1 0
sjackman/golines
A golang formatter that fixes long lines
sjackman/homebrew-bio
:beer::microscope::penguin: Bioinformatics formulae for the Linuxbrew package manager
Language:Ruby2 0
sjackman/homebrew-core
🍻 Default formulae for the missing package manager for macOS
Language:Ruby2 0
sjackman/homebrew-science
Scientific formulae for the Homebrew and Linuxbrew package managers
Language:Ruby2 0
sjackman/hts-sys
Raw rust bindings for htslib
Language:Rust1 0
sjackman/insta
A snapshot testing library for rust
Language:Rust1 0
sjackman/install
:inbox_tray: A fork of Homebrew's installer for Linuxbrew
Language:Shell3 0
sjackman/intel-mkl-src
Redistribute Intel MKL as a crate
Language:Rust0 0
sjackman/itertools
Extra iterator adaptors, iterator methods, free functions, and macros.
Language:Rust1 0
sjackman/ndarray-stats
Statistical routines for ndarray
Language:Rust1 0
sjackman/proptest
Hypothesis-like property testing for Rust
Language:Rust1 0
sjackman/prost
PROST! a Protocol Buffers implementation for the Rust Language
Language:Rust1 0
sjackman/PyTables
A Python package to manage extremely large amounts of data
Language:Python1 0
sjackman/rust-bio-types
A library of common biomedical types.
Language:Rust2 0
sjackman/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Language:Rust2 0
sjackman/vci-directory
[WIP] Holds membership information for SHC issuers that are part of the VCI (https://vci.org/) Directory.
Language:Python2 0