bcgsc/tigmint

Issues

• tigmint_molecule_paf.py: TypeError: expected string or bytes-like object

  #68 opened 3 years ago by mmokrejs
  29

• tigmint compilation issue

  #123 opened a year ago by ferreirafm
  2

• _sqlite3.cpython-310-x86_64-linux-gnu.so: undefined symbol: sqlite3_trace_v2

  #124 opened a year ago by bsb2014
  0

• Understanding tigmint-long outputs

  #120 opened 2 years ago by TromboneEngineer
  3

• Feature has length = 0, Skipping - followed by empty output from tigmint-long

  #119 opened 2 years ago by TromboneEngineer
  9

• Forward+reverse + long reads

  #115 opened 2 years ago by aabaricalla
  4

• yet another "make: *** No rule to make target" issue

  #116 opened 2 years ago by salvatierra8
  5

• pre-alignment

  #105 opened 2 years ago by KnudNorNielsen
  2

• About samtools invalid option in tigmint-make arcs mode

  #101 opened 3 years ago by ClarenceHsiang
  4

• samtools sort error (sort: invalid option -- 't')

  #5 opened 7 years ago by QiushiLi
  2

• pip installation corrupt

  #26 opened 4 years ago by schellt
  5

• ImportError: /lib64/libc.so.6: version `GLIBC_2.18' not found

  #6 opened 7 years ago by QiushiLi
  7

• tigmint-make: minimap2 is being called with -y argument

  #72 opened 3 years ago by mmokrejs
  3

• Cannot compile the bundled while modified copy of make: make-4.1/glob/glob.c:1342: undefined reference to `__alloca'

  #69 opened 3 years ago by mmokrejs
  6

• src/long-to-linked-pe v1.0: Using more than 6 threads does not scale, reverting to 6.

  #67 opened 3 years ago by mmokrejs
  5

• Respect $TMPDIR as anticipated by sort tool

  #60 opened 3 years ago by mmokrejs
  1

• Does bin/tigmint_estimate_dist.py really work with FASTA files as well?

  #66 opened 3 years ago by mmokrejs
  5

• README does not list all dependencies

  #65 opened 3 years ago by mmokrejs
  2

• tigmint-make ignores $PATH and is supposed to be run from unpacked source tree instead

  #63 opened 3 years ago by mmokrejs
  3

• pigz may be better replaced by bgzip

  #62 opened 3 years ago by mmokrejs
  2

• samtools sort may be replaced by bamsort which scales better

  #61 opened 3 years ago by mmokrejs
  2

• Tigmint only works when files are in working directory

  #17 opened 4 years ago by lculibrk
  2

• tigmint-long error

  #56 opened 3 years ago by estolle
  1

• Error when attempting tigmint-make arcs

  #50 opened 4 years ago by katherinedougan
  2

• Error : no progress of scaffolding running

  #52 opened 4 years ago by kishore556
  5

• tigmint-make tigmint error

  #44 opened 4 years ago by wjj666
  2

• Tigmint not making cuts

  #39 opened 4 years ago by elsemikk
  3

• tigmint parameters with multiple linked reads

  #35 opened 4 years ago by hidvegin
  17

• tigmint molecule Error 1

  #30 opened 4 years ago by darencard
  4

• Using MinION reads

  #11 opened 4 years ago by asdcid
  6

• Changing /tmp location

  #34 opened 4 years ago by ilaydabozan
  4

• Tigmint performance on large genome

  #33 opened 5 years ago by andreaswallberg
  3

• tigmint-molecule silent

  #32 opened 5 years ago by francicco
  3

• recipe for target 'merged.barcoded.as0.65.nm5.molecule.size2000.trim0.window1000.span20.breaktigs.barcoded.sortn.bam' failed

  #27 opened 5 years ago by ewafula
  1

• Tigmint-cut not working correctly

  #31 opened 5 years ago by majogomezhughes
  1

• tigmint-molecule

  #29 opened 6 years ago by francicco
  11

• Unknown error preventing tigmint-make across multiple installation methods

  #24 opened 6 years ago by DrPintoThe2nd
  2

• multiple intervals with the same barcode

  #23 opened 6 years ago by dcopetti
  3

• Can I get the breakpoint information?

  #22 opened 6 years ago by luyang93
  2

• gsed: command not found

  #21 opened 6 years ago by mossishahi
  16

• Provide 'make install' procedure

  #10 opened 7 years ago by mmokrejs
  1

• Tigment not found by Linuxbrew

  #16 opened 7 years ago by dminkley
  1

• Scaffolds output tigmint-arcs error

  #15 opened 7 years ago by JordideRaad
  7

• Runtime on finding breakpoints

  #14 opened 7 years ago by JordideRaad
  3

• myassembly.myreads.as0.65.nm5.molecule.tsv in null

  #13 opened 7 years ago by shameem356
  7

• tigmint-make errors

  #12 opened 7 years ago by macarima
  3

• Tigmint's principle to break sequences

  #9 opened 7 years ago by dcopetti
  4

• write temporary bam files

  #8 opened 7 years ago by dcopetti
  16

• brew install arcs failed

  #7 opened 7 years ago by QiushiLi
  2

• make: *** No rule to make target `***.as0.65.nm5.molecule.tsv', needed by `tigmint'. Stop.

  #4 opened 7 years ago by QiushiLi
  4