linked-reads
There are 15 repositories under linked-reads topic.
parklab/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
pdimens/harpy
Process haplotagging data, from raw sequences to phased haplotypes, batteries included.
bcgsc/chromeqc
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
bioinfologics/Pseudoseq.jl
Fake genomes, fake sequencing, real insights.
morispi/LRez
Standalone tool and library allowing to work with barcoded linked-reads
pontushojer/awesome-linked-reads
Collection of tools and resources for linked-reads
anne-gcd/MTG-Link
MTG-Link: Local assembly tool for linked-read data
morispi/LEVIATHAN
Linked-reads based structural variant caller with barcode indexing
nf-core/neutronstar
De novo assembly pipeline for 10X linked-reads using Supernova
RolandFaure/QuickDeconvolution
A software providing reference-free barcode deconvolution for linked reads data
sjackman/tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
sjackman/tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
sjackman/tigmint-slides
Tigmint: Correct Misassemblies Using Linked Reads From Large Molecules