anne-gcd/MTG-Link

Issues

• Converting MTG-Link output to VCF

  #25 opened a year ago by pontushojer
  5

• File not found error in localAssemblyDBG.py

  #27 opened a year ago by pontushojer
  3

• Exception in localAssemblyWithDBGAlgorithm - Unable to get kmer

  #28 opened a year ago by pontushojer
  3

• Selection of minlength (`-m`) parameter for insertion assembly

  #29 opened a year ago by pontushojer
  0

• no results if extra `.` in input GFA name

  #26 opened a year ago by pontushojer
  1

• Question: 10X linked reads as inputs for MTG-Link

  #21 opened 2 years ago by ClarenceHsiang
  1

• 2 Errors about installation test

  #20 opened 2 years ago by Shokusei
  3

• Pbm when orientation contig is '-'

  #16 opened 4 years ago by anne-gcd
  1

• Update GFA output when overlap < ext_size

  #13 opened 4 years ago by anne-gcd
  0

• Gapfilled sequence of length < 2*ext

  #15 opened 5 years ago by anne-gcd
  0

• Error in gfa2fasta.py script

  #14 opened 5 years ago by anne-gcd
  0

• Problem with coordinates of segment in 'Edge' lines of GFA output

  #12 opened 5 years ago by anne-gcd
  0

• Error: "No such file or directory: xxx.alignment.stats"

  #11 opened 5 years ago by anne-gcd
  0

• Fwd vs Rev alignment stats (stats_alignment.py)

  #10 opened 5 years ago by anne-gcd
  0

• Stats alignment fwd vs rev strand

  #9 opened 5 years ago by anne-gcd
  0

• GFA output - error message

  #8 opened 5 years ago by anne-gcd
  0

• Can't add a gap with unknown length in GFA file

  #7 opened 5 years ago by anne-gcd
  0

• Pbm when checking length of solution found

  #6 opened 5 years ago by anne-gcd
  0

• No taking the good sequence from the FASTA file

  #5 opened 5 years ago by anne-gcd
  0

• Returns exception and stops running if query length < 2*k

  #4 opened 5 years ago by anne-gcd
  0

• Remove the empty files from MindTheGap

  #3 opened 5 years ago by anne-gcd
  0

• Output GFA missing data

  #2 opened 5 years ago by anne-gcd
  0

• Statistics for all the possible solutions

  #1 opened 5 years ago by anne-gcd
  0