pontushojer
PhD Student in Biotechnology working on the development of sequencing methods using droplet emulsions for multi-modal analysis
KTH - Royal Institute of TechnologyStockholm
Pinned Repositories
BLR
DBS-Pro
DBSpro Analysis
Aquila
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
awesome-linked-reads
Collection of tools and resources for linked-reads
bioconda-recipes
Conda recipes for the bioconda channel.
BLR
NAIBR
Novel Adjacency Identification with Barcoded Reads
pontushojer's Repositories
pontushojer/awesome-linked-reads
Collection of tools and resources for linked-reads
pontushojer/NAIBR
Novel Adjacency Identification with Barcoded Reads
pontushojer/Aquila
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
pontushojer/bioconda-recipes
Conda recipes for the bioconda channel.
pontushojer/BLR
pontushojer/CheckConstruct
Check PCR constructs
pontushojer/Clew
Handling of ChIB data
pontushojer/Cluster_viewer
pontushojer/cue
Deep learning framework for SV calling and genotyping
pontushojer/DBS_Analysis
pontushojer/ema
Fast & accurate alignment of barcoded short-reads
pontushojer/flyttdata
Flyttdata
pontushojer/genetech
material related to the genetech courses
pontushojer/HapCUT2
software tools for haplotype assembly from sequence data
pontushojer/LinkedSV
pontushojer/LRez
Standalone tool and library allowing to work with barcoded linked-reads
pontushojer/lupp
pontushojer/misc
Collection of useful scripts
pontushojer/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
pontushojer/MultiQC_BLR
pontushojer/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
pontushojer/Novel-X
Novel insertion detection with 10X reads
pontushojer/planets-phojer
Programming Formalisms course HT 2023
pontushojer/pontushojer
About me
pontushojer/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
pontushojer/samplot
Plot structural variant signals from many BAMs and CRAMs
pontushojer/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
pontushojer/starcode
All pairs search and sequence clustering
pontushojer/Thesis_scripts
pontushojer/whatshap
Read-based phasing of genomic variants, also called haplotype assembly