bioinformatics-tool

There are 514 repositories under bioinformatics-tool topic.

  • tseemann/abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

    Language:Perl4482720798
  • lightdock

    lightdock/lightdock

    Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

    Language:Python360118150

  • sunduanchen/Scissor

    Scissor package

    Language:C++23936739

  • inab/trimal

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    Language:C++233107647

  • JianYang-Lab/gsMap

    Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

    Language:Python18547714
  • RNAlysis

    GuyTeichman/RNAlysis

    Analyze your RNA sequencing data without writing a single line of code

    Language:Python13943513

  • KarchinLab/open-cravat

    A modular annotation tool for genomic variants

    Language:JavaScript1372025639
  • seqfu2

    telatin/seqfu2

    :rocket: seqfu - Sequece Fastx Utilities

    Language:Nim1213219

  • Superzchen/iLearnPlus

    iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

    Language:Python11951433

  • avrabyt/YouTube-Tutorials

    📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

    Language:Python1186348

  • bcgsc/RNA-Bloom

    :hibiscus: reference-free transcriptome assembly for short and long reads

    Language:Java1079789

  • imgag/ClinCNV

    Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

    Language:R919486
  • BioBlender21

    PabloEnmanuelRamos/BioBlender21

    Blender plugin to process biological data and molecular work.

    Language:Python89141412

  • chriscainx/mnnpy

    An implementation of MNN (Mutual Nearest Neighbors) correct in python.

    Language:Python7554833

  • rcedgar/reseek

    Protein structure alignment and search algorithm

    Language:C++7321110

  • josiahseaman/FluentDNA

    FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

    Language:JavaScript696826

  • ShujiaHuang/geneview

    Genomics data visualization in Python by using matplotlib.

    Language:Python66539

  • ncsa/NEAT

    NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

    Language:Python6558321

  • muellan/metacache

    memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

    Language:C++6454913

  • bcgsc/tigmint

    ⛓ Correct misassemblies using linked AND long reads

    Language:Python63165313

  • JetBrains-Research/snakecharm

    Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

    Language:Python6244288
  • stitchr

    JamieHeather/stitchr

    Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

    Language:Python5934110

  • ebi-jdispatcher/webservice-clients

    A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs

    Language:Perl544525

  • bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

    Language:HTML5343614

  • clemgoub/TE-Aid

    Annotation helper tool for the manual curation of transposable element consensus sequences

    Language:R52298

  • YaqiangCao/cLoops2

    Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

    Language:Python521169

  • onclave/NSGA-II

    an implementation of NSGA-II in java

    Language:Java5121422
  • HTStream

    s4hts/HTStream

    A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

    Language:C++51713412

  • treangenlab/methphaser

    MethPhaser: methylation-based haplotype phasing of human genomes

    Language:Python503204

  • biologger/speciesprimer

    The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

    Language:Python4533418

  • labstructbioinf/localpdb

    Python package to manage protein structures and their annotations

    Language:Python440195

  • telatin/covtobed

    ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

    Language:Makefile441123

  • Kukuster/SumStatsRehab

    GWAS summary statistics files QC tool

    Language:Python42286

  • akcorut/kGWASflow

    kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

    Language:Python4123810

  • bcgsc/goldrush

    Linear-time de novo Long Read Assembler

    Language:C++4110482
  • taxburst

    taxburst/taxburst

    sunburst plots for taxonomy - working to update Krona

    Language:HTML411