bioinformatics-tool

There are 424 repositories under bioinformatics-tool topic.

  • tseemann/abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

    Language:Perl3792920293
  • lightdock

    lightdock/lightdock

    Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

    Language:Python312126942

  • sunduanchen/Scissor

    Scissor package

    Language:C++19335834

  • inab/trimal

    A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

    Language:C++182127242
  • RNAlysis

    GuyTeichman/RNAlysis

    Analyze your RNA sequencing data without writing a single line of code

    Language:Python12942913

  • avrabyt/YouTube-Tutorials

    📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

    Language:Python1177348

  • KarchinLab/open-cravat

    A modular annotation tool for genomic variants

    Language:JavaScript1162121828
  • seqfu2

    telatin/seqfu2

    :rocket: seqfu - Sequece Fastx Utilities

    Language:Nim1123207

  • bcgsc/RNA-Bloom

    :hibiscus: reference-free transcriptome assembly for short and long reads

    Language:Java9811687

  • Superzchen/iLearnPlus

    iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

    Language:Python9661434
  • BioBlender21

    PabloEnmanuelRamos/BioBlender21

    Blender plugin to process biological data and molecular work.

    Language:Python84141411

  • imgag/ClinCNV

    Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

    Language:R7910462

  • chriscainx/mnnpy

    An implementation of MNN (Mutual Nearest Neighbors) correct in python.

    Language:Python7264632

  • josiahseaman/FluentDNA

    FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

    Language:JavaScript658827

  • ShujiaHuang/geneview

    Genomics data visualization in Python by using matplotlib.

    Language:Python64638

  • JetBrains-Research/snakecharm

    Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

    Language:Python6174207

  • muellan/metacache

    memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

    Language:C++5774311

  • bcgsc/tigmint

    ⛓ Correct misassemblies using linked AND long reads

    Language:Python56185313

  • ebi-jdispatcher/webservice-clients

    A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs

    Language:Perl515523

  • ncsa/NEAT

    NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

    Language:Python5177314

  • bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

    Language:HTML5043515
  • stitchr

    JamieHeather/stitchr

    Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

    Language:Python5043510
  • HTStream

    s4hts/HTStream

    A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

    Language:C++4981339

  • onclave/NSGA-II

    an implementation of NSGA-II in java

    Language:Java4821223

  • rcedgar/reseek

    Protein structure alignment and search algorithm

    Language:C++472103

  • clemgoub/TE-Aid

    Annotation helper tool for the manual curation of transposable element consensus sequences

    Language:R45287

  • YaqiangCao/cLoops2

    Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

    Language:Python443137

  • telatin/covtobed

    ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

    Language:C++431123

  • treangenlab/methphaser

    MethPhaser: methylation-based haplotype phasing of human genomes

    Language:Python433161

  • labstructbioinf/localpdb

    Python package to manage protein structures and their annotations

    Language:Python411195

  • biologger/speciesprimer

    The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

    Language:Python4033119

  • bcgsc/goldrush

    Linear-time de novo Long Read Assembler

    Language:C++3710442

  • Kukuster/SumStatsRehab

    GWAS summary statistics files QC tool

    Language:Python36276

  • akcorut/kGWASflow

    kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

    Language:Python313338

  • desmid/mview

    MView extracts and reformats the results of a sequence database search or multiple alignment.

    Language:Perl3032112

  • suchapalaver/krust

    Bioinformatics 101 tool for counting unique k-length substrings in DNA

    Language:Rust300185