bobeobibo/phigaro

Issues

• TypeError: object.__new__(BlockManager) is not safe, use BlockManager.__new__()

  #33 opened a year ago by jdwinkler-lanzatech
  17

• Can the GC score calculation be improved?

  #12 opened a year ago by chris-rands
  2

• Wrong paths are used when installing figaro via conda

  #39 opened a year ago by kabilov
  1

• Output coordinates are off by 1

  #35 opened a year ago by snystrom
  2

• Short Sequences

  #36 opened a year ago by antixz1
  1

• Html result file error

  #38 opened a year ago by liuxiong714
  1

• glibc incompatible

  #41 opened a year ago by GracaP88
  3

• What is the latest version of phigaro ?

  #43 opened a year ago by duboism
  1

• Can the location where the intermediate file is generated be changed to be inside the output file?

  #44 opened a year ago by Dx-wmc
  3

• issues on output files

  #45 opened a year ago by qianxin-kxy
  0

• issues about output Files

  #46 opened a year ago by qianxin-kxy
  1

• Don't store program and data location in config files

  #42 opened 2 years ago by duboism
  2

• Could not download database of phigaro

  #40 opened 2 years ago by quliping
  4

• phigaro-setup - non-interactive setup possible?

  #29 opened 4 years ago by rpetit3
  5

• Empty output file in some genomes

  #30 opened 4 years ago by Daikuang
  4

• db download :: download.ripcm.com/phigaro/ broken

  #34 opened 3 years ago by EricDeveaud
  6

• Can't understand the option "-d: Exclude sequences with length < 20000 automatically".

  #31 opened 3 years ago by ChenTianYi99
  2

• Calculation of the number of intact and defective prophages

  #32 opened 4 years ago by abhinavyesss
  1

• pvog database link not working

  #28 opened 4 years ago by Handymanalan
  2

• Input prodigal GFF/output prophage call in GFF format?

  #10 opened 5 years ago by jdwinkler-lanzatech
  8

• Cannot download fasta sequences

  #6 opened 4 years ago by tauqeer9
  8

• Unable to run `sudo phigaro-setup`

  #27 opened 4 years ago by gabriellovate
  4

• Are there plans to submit Phigaro to Bioconda?

  #25 opened 4 years ago by rpetit3
  6

• Modes Description

  #26 opened 4 years ago by SionBayliss
  1

• Include phigaro in What the Phage (WtP)?

  #24 opened 4 years ago by chris-rands
  2

• Error with a big multifasta file

  #21 opened 4 years ago by luayou
  2

• Config file error

  #22 opened 4 years ago by snayfach
  1

• KeyError: 'mean_gc'

  #23 opened 4 years ago by snayfach
  1

• use command instead of locate

  #13 opened 5 years ago by EricDeveaud
  4

• output directory name generation :: breaks when local dir used

  #20 opened 5 years ago by EricDeveaud
  6

• How are transposable elements determined?

  #18 opened 5 years ago by snayfach
  1

• Using phigaro via conda

  #16 opened 5 years ago by chris-rands
  1

• Remove Error for sequences < 20000 bp

  #14 opened 5 years ago by vinisalazar
  1

• please tag a release

  #11 opened 5 years ago by EricDeveaud
  3

• 'Readme.md' couldn't be found during installation

  #8 opened 5 years ago by LSTUGA
  1