Pinned Repositories
2023-04-27-unimelb-dcgenomics
Workshop repository for the Data Carpentry Genomics workshop at UniMelb, April 2023.
abacat
🥑 A Bacterial genome Comparison and Annotation Toolkit
awesome-microbiome-stats
🧮🦠 A curated list of papers on microbiome statistical analysis and tools.
BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
bpb
Boas Práticas Bot
COG-translator
🧬 ↩️ Easy conversion between NCBI COG names and codes
CursoCCB
Repositório contendo arquivos do Curso de Programação e Computação Científica para Biólogos
machine-learning-novice-sklearn
A Carpentry style lesson on machine learning with Python and scikit-learn.
metaphor
Metaphor: a general-purpose workflow for assembly and binning of metagenomes
sparkmer-count
k-mer counting with Spark ✨
vinisalazar's Repositories
vinisalazar/metaphor
Metaphor: a general-purpose workflow for assembly and binning of metagenomes
vinisalazar/2023-04-27-unimelb-dcgenomics
Workshop repository for the Data Carpentry Genomics workshop at UniMelb, April 2023.
vinisalazar/2023-05-09-unimelb-swc
Workshop repository for the Software Carpentry workshop at UniMelb, May 2023.
vinisalazar/bioconda-recipes
Conda recipes for the bioconda channel.
vinisalazar/CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
vinisalazar/CCMetagen
Microbiome classification pipeline
vinisalazar/conda
A system-level, binary package and environment manager running on all major operating systems and platforms.
vinisalazar/corgi
Classifier for ORGanelles (Inter alia)
vinisalazar/dnaapler
Reorients assembled microbial sequences
vinisalazar/docs.carpentries.org
Community Documentation for the Carpentries
vinisalazar/erddapy
Python interface for ERDDAP
vinisalazar/first-git-repo
vinisalazar/github-skill-up-maintainers
A skill-up for new lesson Maintainers
vinisalazar/intro-to-python-florey-april-2024
Workshop website for the MIG Python workshop at the Florey
vinisalazar/maintainer-onboarding
vinisalazar/manuscript-notebooks-metaphor
Analysis notebooks for the Metaphor manuscript.
vinisalazar/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
vinisalazar/mg-example-data
Example metagenomics data
vinisalazar/my-recipe-source
Example repository to demonstrate how to build a conda recipe.
vinisalazar/nf-core-maple
vinisalazar/ohw-tutorials
OceanHackWeek - Tutorials
vinisalazar/ohw23_proj_SAupwelling
vinisalazar/orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
vinisalazar/python-novice-inflammation
Programming with Python
vinisalazar/scatterd
Scatterd is a Python package for easy and fast creation of beautiful scatter plots.
vinisalazar/searoute-py
A python package to calculate the shortest sea route between two points on Earth.
vinisalazar/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
vinisalazar/Struo2
Scalable creating/updating of metagenome profiling databases
vinisalazar/torchapp
A wrapper for PyTorch projects to create easy command-line inferfaces and manage hyper-parameter tuning
vinisalazar/vinisalazar
My GitHub profile