Pinned Repositories
bamf
A simple tool for manipulating bam entries by fragment size
cmdfun
Framework for building R interfaces to shell commands
cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
didactic-potato
An R package for extracting and visualizing genomic signal
memes
An R interface to the MEME Suite
memes_docker
rd4tools
An R interface to d4tools
vplot
A commandline tool for generating vplot matrices from paired end sequencing data such as MNase-seq, ATAC-seq, or CUT&RUN.
snystrom's Repositories
snystrom/memes
An R interface to the MEME Suite
snystrom/cmdfun
Framework for building R interfaces to shell commands
snystrom/didactic-potato
An R package for extracting and visualizing genomic signal
snystrom/rd4tools
An R interface to d4tools
snystrom/vplot
A commandline tool for generating vplot matrices from paired end sequencing data such as MNase-seq, ATAC-seq, or CUT&RUN.
snystrom/bamf
A simple tool for manipulating bam entries by fragment size
snystrom/cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
snystrom/memes_docker
snystrom/nested-data_workshop
snystrom/snystrom.github.io
snystrom/bioconda-recipes
Conda recipes for the bioconda channel.
snystrom/bioconductor_docker_meme
snystrom/bioinfo-vagrant
A Vagrant R bioinformatics/development environment
snystrom/DeepThought
A simple blog theme focused on writing powered by Bulma and Zola.
snystrom/faire-pipeline
snystrom/ggcat
Compacted and colored de Bruijn graph construction and querying
snystrom/memes-manual
remote host of the memes R package website to prevent website code from mucking up bioconductor
snystrom/memes_paper
snystrom/MotifDb
This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.
snystrom/Mycelia
-omics knowledge graphs with Julia & Neo4J
snystrom/nystrom-niederhuber_development_2020
snystrom/parseQuantStudio
snystrom/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
snystrom/plyranges
A grammar of genomic data transformation
snystrom/rd4
snystrom/Readr.jl
snystrom/rust-bwa
Rust wrapper of the BWA C API
snystrom/UNC-Dissertation-Template
Updated LaTeX template for UNC dissertations based on Björn Brandenburg's template
snystrom/universalmotif
Motif manipulation functions for R.
snystrom/vplotr
An R package for generating vplot matrices from MNase-seq or CUT&RUN data