genomic-regions

There are 15 repositories under genomic-regions topic.

  • tseemann/abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

    Language:Perl3612919989

  • bobeobibo/phigaro

    Phigaro is a scalable command-line tool for predicting phages and prophages

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  • epigen/enrichment_analysis

    A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

    Language:Python222231

  • databio/bedshift

    Bedfile perturbation tool

    Language:Python1616222

  • epigen/genome_tracks

    A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

    Language:Python152130

  • remap-cisreg/ReMapEnrich

    ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.

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  • bernatgel/regioneR

    An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests

    Language:R13283

  • tkonopka/GeneticThesaurus

    Thesaurus for genetic variants

    Language:Java9111

  • stevekm/reference-annotations

    Makefile for reference annotations for genes & genomic regions

    Language:Makefile8314

  • dancooke/mappable

    C++ library for genomic region based storage and querying

    Language:C++7220

  • aaszodi/multovl

    Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.

    Language:C++2100

  • hyperbrowser/genomic-hyperbrowser

    The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01

    Language:Python210482

  • sraghav-lab/Bedsect

    BedSect web server source code repository.

    Language:PHP1311

  • stevekm/fastq-bed-subset

    Filter fastq file based on bed regions

    Language:Nextflow1101

  • dansta0804/TF_analysis

    Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.

    Language:R0100