databio/bedshift

Issues

• Bedshift seems to produce invalid regions

  #49 opened 2 years ago by nleroy917
  1

• bedshift is using an outdated pandas API

  #50 opened 2 years ago by nleroy917
  0

• Random seed

  #12 opened 4 years ago by aaron-gu
  1

• Shift is too slow

  #11 opened 4 years ago by aaron-gu
  2

• Move chrom_lengths

  #20 opened 4 years ago by nsheff
  0

• Add from valid regions

  #23 opened 4 years ago by aaron-gu
  0

• Passing list-likes to .loc or [] with any missing labels is no longer supported.

  #32 opened 4 years ago by nsheff
  6

• Systematize change notification

  #34 opened 4 years ago by nsheff
  0

• Name of replicate files

  #41 opened 4 years ago by nsheff
  1

• Add does not add proportionally to each chromosome

  #10 opened 4 years ago by aaron-gu
  0

• size of test file

  #21 opened 4 years ago by nsheff
  2

• Reported regions changed are inaccurate if regions are outside chrom sizes

  #22 opened 4 years ago by nsheff
  1

• Addfile bug

  #26 opened 4 years ago by aaron-gu
  5

• Write doc guides

  #3 opened 4 years ago by aaron-gu
  6

• displayed outputfiles are incorrect with repetitions

  #40 opened 4 years ago by nsheff
  1

• make required folders

  #31 opened 4 years ago by nsheff
  2

• Shift from file and Drop from file logic

  #36 opened 4 years ago by aaron-gu
  0

• show default output file when not specified

  #18 opened 4 years ago by nsheff
  1

• Performance improvement

  #1 opened 5 years ago by aaron-gu
  2

• Refgenie integration

  #2 opened 4 years ago by aaron-gu
  6

• bedshift can't handle numeric chroms

  #19 opened 4 years ago by nsheff
  0

• bug in calculation of regions changed?

  #5 opened 4 years ago by nsheff
  6