nsheff
Associate professor and leader of @databio computational biology research group.
University of VirginiaVA
Pinned Repositories
pepatac
A modular, containerized pipeline for ATAC-seq data processing
pypiper
Python toolkit for building restartable pipelines
simpleCache
Simplified R caching for reproducible big data projects
docker
Dockerfiles for R development, jekyll serving, graphics, etc.
LOLA
Locus Overlap Analysis: Enrichment of Genomic Ranges
newgrant
yacman2
YAML configuration manager
peppy
Project metadata manager for PEPs in Python
refgenie
Reference genome resource manager
nsheff's Repositories
nsheff/LOLA
Locus Overlap Analysis: Enrichment of Genomic Ranges
nsheff/docker
Dockerfiles for R development, jekyll serving, graphics, etc.
nsheff/newgrant
nsheff/yacman2
YAML configuration manager
nsheff/autotest
nsheff/batchtools
Tools for computation on batch systems
nsheff/bioc8145
BIOC 8145 provides the statistical and programming background as well as introduction to software tools that enable analysis of functional genomics data sets.
nsheff/CPHG-Welcome
A list of tools to make computing at CPHG easier
nsheff/Cumulative-Distribution-Transform
Cumulative Distribution Transform
nsheff/CWriteR
C++ functions for writing large vectors from R
nsheff/dipPeak
Kernel density estimator for DNase data.
nsheff/env
Linux environment files
nsheff/fermikit
De novo assembly based variant calling pipeline for Illumina short reads
nsheff/gitignore
A collection of useful .gitignore templates
nsheff/IRangeKernels
Extends IRanges by adding kernel multiplication to Views objects
nsheff/mediabuilder_leftovers
nsheff/pandoc-wrapfig
A simple pandoc filter that facilitates using the wrapfig package.
nsheff/rgenie
nsheff/scholdoc-examples
Examples of documents written in ScholarlyMarkdown and converted with Scholdoc
nsheff/targets
User manual of the targets R pacakge
nsheff/testlmod
nsheff/user_guide
The CWL v1.0 user guide