Global Alliance for Genomics and Health
An international coalition, formed to enable the sharing of genomic and clinical data.
Pinned Repositories
benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
ga4gh-schemas
Models and APIs for Genomic data. RETIRED 2018-01-24
ga4gh-server
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
mme-apis
Documentation for the MatchmakerExchange APIs
task-execution-schemas
tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
vrs
Extensible specification for representing and uniquely identifying biological sequence variation
vrs-python
GA4GH Variation Representation Python Implementation
workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
Global Alliance for Genomics and Health's Repositories
ga4gh/task-execution-schemas
ga4gh/vrs
Extensible specification for representing and uniquely identifying biological sequence variation
ga4gh/workflow-execution-service-schemas
The WES API is a standard way to run and manage portable workflows.
ga4gh/data-repository-service-schemas
A repository for the schemas used for the Data Repository Service.
ga4gh/vrs-python
GA4GH Variation Representation Python Implementation
ga4gh/tool-registry-service-schemas
APIs for discovering genomics tools, their metadata and their containers
ga4gh/data-security
This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
ga4gh/va-spec
An information model for representing variant annotations.
ga4gh/quality-control-wgs
Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
ga4gh/refget
GA4GH Refget specifications docs
ga4gh/fasp-scripts
ga4gh/TASC
TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
ga4gh/Get-Started-with-GA4GH-APIs
ISMB 2022 tutorial on FASP and Starter Kit
ga4gh/pedigree_family_history_terminology
ga4gh/ga4gh-starter-kit-drs
Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification
ga4gh/cat-vrs
A terminology and data model for describing categorical variation concepts.
ga4gh/w3id.org
Forwarding links and rewrite rules for w3id.org
ga4gh/fasp-clients
a place for client code from the FASP effort
ga4gh/ga4gh-testbed-ui
Web UI for the GA4GH Testbed Reporting service
ga4gh/gks-core
Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
ga4gh/cat-vrs-python
GA4GH Categorical Variation Representation Python Implementation
ga4gh/ga4gh-starter-kit-common
Common utils library for GA4GH Starter Kit web services
ga4gh/ga4gh-testbed-api
GA4GH-wide testbed infrastructure for hosting testbed reports
ga4gh/ga4gh-testbed-lib
Python library for creating GA4GH testbed reports according to a harmonized, cross-workstream schema
ga4gh/gks-starter-repo
A starting point to copy and use for teams wishing to quickly define their own schema extensions and profiles to the VA, Cat-VRS or VRS schemas.
ga4gh/va-spec-python
GA4GH Variation Annotation Python Implementation
ga4gh/ga4gh-bed
The browser extensible data (BED) file format describes genomic intervals on chromosomes or scaffolds
ga4gh/gks-metaschema
Tools and scripts for parsing the GKS standards metaschemas
ga4gh/gks-portal
ga4gh/gks2clinvar
A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data